RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 MYH8P13535 1937 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 MINDY4BA8MYZ0 360 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 PATL2C9JE40 543 aaKnown RBP12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 FOXP2O15409 715 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 HMGCRP04035 888 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 XRCC5P13010 732 aaKnown RBP12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 COG2Q14746 738 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 CCL14Q16627 93 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 ZMYM1Q5SVZ6 1142 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 AMOTL1Q8IY63 956 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 EXOC6Q8TAG9 804 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 GCC1Q96CN9 775 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 DDRGK1Q96HY6 314 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 NUDT12Q9BQG2 462 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 FSD1Q9BTV5 496 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 CRISPLD2Q9H0B8 497 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 VCPKMTQ9H867 229 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 STAP2Q9UGK3 403 aa12.51□□□□□ -0.41
PRPF40B-204ENST00000527253 IGHDP01880 384 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 DSG3P32926 999 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 PDE1AP54750 535 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 MAP3K21Q5TCX8 1036 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 CCDC129Q6ZRS4 1044 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 IFNL3Q8IZI9 196 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 TANGO6Q9C0B7 1094 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 KANSL2Q9H9L4 492 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 ARHGEF10LQ9HCE6 1279 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 FLRT1Q9NZU1 646 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 ROBO3Q96MS0 1386 aa12.5□□□□□ -0.41
PRPF40B-204ENST00000527253 GREB1LQ9C091 1923 aaPredicted RBP12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 RPTORQ8N122 1335 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 IGKV6D-41A0A0C4DH26 115 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 PRDM1O75626 825 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 TFRCP02786 760 aaKnown RBP12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 APPP05067 770 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 GNAT2P19087 354 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 PTPREP23469 700 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 TDO2P48775 406 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 ATP2B2Q01814 1243 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 MAP2K5Q13163 448 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 SMC5Q8IY18 1101 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 SOCS4Q8WXH5 440 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 LPAR1Q92633 364 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 ATG4CQ96DT6 458 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 MOV10L1Q9BXT6 1211 aaKnown RBP12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 HOXC10Q9NYD6 342 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 TACC3Q9Y6A5 838 aa12.49□□□□□ -0.41
PRPF40B-204ENST00000527253 SLC15A5A6NIM6 579 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 H0YGN5 161 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 FARP2O94887 1054 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 IGHA2P01877 340 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 PRKAR2AP13861 404 aaKnown RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 RGS2P41220 211 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 MNX1P50219 401 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 CCNA1P78396 465 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 CACNB2Q08289 660 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 CCAR1Q8IX12 1150 aaKnown RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 NPLOC4Q8TAT6 608 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 DIS3LQ8TF46 1054 aaKnown RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 LNPKQ9C0E8 428 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 MKNK2Q9HBH9 465 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 HMX1Q9NP08 348 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 FBXO28Q9NVF7 368 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 ADAMTS5Q9UNA0 930 aa12.48□□□□□ -0.41
PRPF40B-204ENST00000527253 WDR46O15213 610 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 FLOT1O75955 427 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 SLC34A2O95436 690 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 ZKSCAN1P17029 563 aaPredicted RBP12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 CCND3P30281 292 aaPredicted RBP12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 GRB14Q14449 540 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 LRRFIP1Q32MZ4 808 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 VPS53Q5VIR6 699 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 WDR78Q5VTH9 848 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 B4GALNT3Q6L9W6 998 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 EVI5LQ96CN4 794 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 NUP88Q99567 741 aaPredicted RBP12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 APBA2Q99767 749 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 SPATC1LQ9H0A9 340 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 SH2D4AQ9H788 454 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 INCENPQ9NQS7 918 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 A0A0G2JMZ2 1700 aa12.47□□□□□ -0.41
PRPF40B-204ENST00000527253 PARP14Q460N5 1801 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 HOXC6P09630 235 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 ERCC3P19447 782 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 PPARAQ07869 468 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 AAMPQ13685 434 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 TMEM132BQ14DG7 1078 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 FAM83BQ5T0W9 1011 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 SAMD1Q6SPF0 538 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 DPF3Q92784 378 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 PAWRQ96IZ0 340 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 FAM227BQ96M60 508 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 RWDD1Q9H446 243 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 NYAP2Q9P242 653 aa12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 SUPT16HQ9Y5B9 1047 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-204ENST00000527253 A0A0D9SFI3 127 aa12.45□□□□□ -0.42
PRPF40B-204ENST00000527253 F5H6K3 240 aa12.45□□□□□ -0.42
PRPF40B-204ENST00000527253 COBLO75128 1261 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms