RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 TRDNQ13061 729 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 PABPC4Q13310 644 aaKnown RBP eCLIP15.25■□□□□ 0.03
SMPD1-202ENST00000526280 CRHR2Q13324 411 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 TAF1CQ15572 869 aaPredicted RBP15.25■□□□□ 0.03
SMPD1-202ENST00000526280 RNF20Q5VTR2 975 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 LPAR1Q92633 364 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 R3HDMLQ9H3Y0 253 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 VCPKMTQ9H867 229 aa15.25■□□□□ 0.03
SMPD1-202ENST00000526280 TSGA10IPQ3SY00 556 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 NCOA7Q8NI08 942 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 KCNB2Q92953 911 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 TTC14Q96N46 770 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 USP26Q9BXU7 913 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 ZFYVE28Q9HCC9 887 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 GOPCQ9HD26 462 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 TSKSQ9UJT2 592 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 STX8Q9UNK0 236 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 MYH4Q9Y623 1939 aa15.24■□□□□ 0.03
SMPD1-202ENST00000526280 F5H6K3 240 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 TLR2O60603 784 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 CYP2C8P10632 490 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 HSPA4P34932 840 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 KLRC3Q07444 240 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 CCDC178Q5BJE1 867 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 RCSD1Q6JBY9 416 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 CYB5R4Q7L1T6 521 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 RALYLQ86SE5 291 aaKnown RBP15.23■□□□□ 0.03
SMPD1-202ENST00000526280 IQCA1Q86XH1 822 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 DGKHQ86XP1 1220 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 RASEFQ8IZ41 740 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 SPICE1Q8N0Z3 855 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 LRRC47Q8N1G4 583 aaKnown RBP15.23■□□□□ 0.03
SMPD1-202ENST00000526280 GMCL1P1Q8NEA9 526 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 PARK7Q99497 189 aaKnown RBP15.23■□□□□ 0.03
SMPD1-202ENST00000526280 ZKSCAN3Q9BRR0 538 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 ASCC2Q9H1I8 757 aaPredicted RBP15.23■□□□□ 0.03
SMPD1-202ENST00000526280 PRDM10Q9NQV6 1147 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 PNMA3Q9UL41 463 aa15.23■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L15C9J2P7 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L13C9JLJ4 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L11C9JVI0 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L18D6R9N7 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L22D6RA61 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L17D6RBQ6 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L19D6RCP7 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L20D6RJB6 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 ZKSCAN1P17029 563 aaPredicted RBP15.22■□□□□ 0.03
SMPD1-202ENST00000526280 OSBPP22059 807 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 USP17L24Q0WX57 530 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 NOM1Q5C9Z4 860 aaKnown RBP15.22■□□□□ 0.03
SMPD1-202ENST00000526280 CATSPERGQ6ZRH7 1159 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 MB21D2Q8IYB1 491 aaPredicted RBP15.22■□□□□ 0.03
SMPD1-202ENST00000526280 ANKS1AQ92625 1134 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 ZSCAN10Q96SZ4 725 aaPredicted RBP15.22■□□□□ 0.03
SMPD1-202ENST00000526280 TMEM47Q9BQJ4 181 aa15.22■□□□□ 0.03
SMPD1-202ENST00000526280 RPAP3Q9H6T3 665 aaPredicted RBP15.22■□□□□ 0.03
SMPD1-202ENST00000526280 WDR46O15213 610 aaKnown RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 EIF5BO60841 1220 aaKnown RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 NDUFB10O96000 172 aa15.21■□□□□ 0.03
SMPD1-202ENST00000526280 TOP1P11387 765 aaKnown RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 IRX3P78415 501 aaPredicted RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 C8orf34Q49A92 452 aa15.21■□□□□ 0.03
SMPD1-202ENST00000526280 TNS4Q8IZW8 715 aa15.21■□□□□ 0.03
SMPD1-202ENST00000526280 ENAHQ8N8S7 591 aaPredicted RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 ADGRA2Q96PE1 1338 aa15.21■□□□□ 0.03
SMPD1-202ENST00000526280 P2RX7Q99572 595 aaKnown RBP15.21■□□□□ 0.03
SMPD1-202ENST00000526280 UBAC1Q9BSL1 405 aa15.21■□□□□ 0.03
SMPD1-202ENST00000526280 TNKSO95271 1327 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 GPR25O00155 361 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 RAD21O60216 631 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 KRT32Q14532 448 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 SEC23AQ15436 765 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 IFFO2Q5TF58 517 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 SLFN13Q68D06 897 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 C17orf99Q6UX52 265 aa15.2■□□□□ 0.02
SMPD1-202ENST00000526280 SMCR8Q8TEV9 937 aaPredicted RBP15.2■□□□□ 0.02
SMPD1-202ENST00000526280 SEC24BO95487 1268 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 ANTXR2P58335 489 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 HERVK_113P62684 666 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 COL9A3Q14050 684 aaPredicted RBP15.19■□□□□ 0.02
SMPD1-202ENST00000526280 COG2Q14746 738 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 ADCK5Q3MIX3 580 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 FAM83BQ5T0W9 1011 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 CHST3Q7LGC8 479 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 GMCL1Q96IK5 515 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 NEK1Q96PY6 1258 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 NUP88Q99567 741 aaPredicted RBP15.19■□□□□ 0.02
SMPD1-202ENST00000526280 TANGO6Q9C0B7 1094 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 CPA4Q9UI42 421 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 RBM19Q9Y4C8 960 aaKnown RBP15.19■□□□□ 0.02
SMPD1-202ENST00000526280 SNX14Q9Y5W7 946 aa15.19■□□□□ 0.02
SMPD1-202ENST00000526280 IFIT3O14879 490 aaKnown RBP15.18■□□□□ 0.02
SMPD1-202ENST00000526280 BCRP11274 1271 aa15.18■□□□□ 0.02
SMPD1-202ENST00000526280 MCCP23508 829 aa15.18■□□□□ 0.02
SMPD1-202ENST00000526280 MCM5P33992 734 aa15.18■□□□□ 0.02
SMPD1-202ENST00000526280 GCLCP48506 637 aaPredicted RBP15.18■□□□□ 0.02
SMPD1-202ENST00000526280 SART3Q15020 963 aaKnown RBP15.18■□□□□ 0.02
SMPD1-202ENST00000526280 IGDCC4Q8TDY8 1250 aa15.18■□□□□ 0.02
SMPD1-202ENST00000526280 ZNF296Q8WUU4 475 aaPredicted RBP15.18■□□□□ 0.02
SMPD1-202ENST00000526280 MTA3Q9BTC8 594 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms