RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 RNF216Q9NWF9 866 aaPredicted RBP14.23□□□□□ -0.13
SDCBP-211ENST00000523441 PNMA6EA0A0J9YXQ4 647 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 ZBTB22O15209 634 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 SEPT4O43236 478 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 GNAI3P08754 354 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 CLTBP09497 229 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 HOXC6P09630 235 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 ERCC3P19447 782 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 DNAJB2P25686 324 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 PPP4CP60510 307 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 CCDC158Q5M9N0 1113 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 CCDC129Q6ZRS4 1044 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 METTL16Q86W50 562 aaKnown RBP14.22□□□□□ -0.13
SDCBP-211ENST00000523441 LENG1Q96BZ8 264 aaPredicted RBP14.22□□□□□ -0.13
SDCBP-211ENST00000523441 C12orf42Q96LP6 360 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 TMEM39AQ9NV64 488 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 NAV1Q8NEY1 1877 aa14.22□□□□□ -0.13
SDCBP-211ENST00000523441 COL11A1P12107 1806 aaPredicted RBP14.22□□□□□ -0.13
SDCBP-211ENST00000523441 MYH8P13535 1937 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 PGK1P00558 417 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 FPGSQ05932 587 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 SEPT2Q15019 361 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 SPATC1LQ9H0A9 340 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 KIAA1683Q9H0B3 1180 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 XPNPEP3Q9NQH7 507 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 SERPINB13Q9UIV8 391 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 TNNQ9UQP3 1299 aa14.21□□□□□ -0.13
SDCBP-211ENST00000523441 ZNF236Q9UL36 1845 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 TCF20Q9UGU0 1960 aaKnown RBP14.2□□□□□ -0.14
SDCBP-211ENST00000523441 GRXCR1A8MXD5 290 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 EVX2Q03828 476 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 OLFML2BQ68BL8 750 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 MAGEB6Q8N7X4 407 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 BCL11AQ9H165 835 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 PRDM12Q9H4Q4 367 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 ZNF576Q9H609 170 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 TACC3Q9Y6A5 838 aa14.2□□□□□ -0.14
SDCBP-211ENST00000523441 POLR3DP05423 398 aaPredicted RBP14.19□□□□□ -0.14
SDCBP-211ENST00000523441 PGK2P07205 417 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 RARBP10826 455 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 IGFBP4P22692 258 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 PBX2P40425 430 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 PLCD1P51178 756 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 COG2Q14746 738 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 SNX17Q15036 470 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 TNNI3KQ59H18 835 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 TATDN1Q6P1N9 297 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 SPICE1Q8N0Z3 855 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 TIFAQ96CG3 184 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 GAS2L1Q99501 681 aaPredicted RBP14.19□□□□□ -0.14
SDCBP-211ENST00000523441 SLC5A4Q9NY91 659 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 FPGT-TNNI3KV9GXZ4 949 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 MYO9BQ13459 2157 aa14.19□□□□□ -0.14
SDCBP-211ENST00000523441 GBF1Q92538 1859 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 A0A0G2JMZ2 1700 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 A0A1W2PQ45 241 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 A0A1W2PQY0 241 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 APBB1O00213 710 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 RAD21O60216 631 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 FLOT1O75955 427 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 GNAI2P04899 355 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 TAL1P17542 331 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 SHMT1P34896 483 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 LBX2Q6XYB7 198 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 TTC6Q86TZ1 520 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 CLEC10AQ8IUN9 316 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 IL27Q8NEV9 243 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 FRAT1Q92837 279 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 CLUAP1Q96AJ1 413 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 ATG4CQ96DT6 458 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 MAML3Q96JK9 1138 aa14.18□□□□□ -0.14
SDCBP-211ENST00000523441 CCDC8Q9H0W5 538 aaPredicted RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 TLR7Q9NYK1 1049 aaKnown RBP14.18□□□□□ -0.14
SDCBP-211ENST00000523441 A0A1W2PRG0 241 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 STRNO43815 780 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 HOXD11P31277 338 aaPredicted RBP14.17□□□□□ -0.14
SDCBP-211ENST00000523441 GUCY1A2P33402 732 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 SLC4A3P48751 1232 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 MTX1Q13505 466 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 KIAA1755Q5JYT7 1200 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 RNF180Q86T96 592 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 MICALL1Q8N3F8 863 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 ADAMTS19Q8TE59 1207 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.17□□□□□ -0.14
SDCBP-211ENST00000523441 HOXC10Q9NYD6 342 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 PHF24Q9UPV7 400 aa14.17□□□□□ -0.14
SDCBP-211ENST00000523441 BCAR3O75815 825 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 ACRP10323 421 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 FCER1AP12319 257 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 SLC44A5Q8NCS7 719 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 VTI1AQ96AJ9 217 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 FAM122AQ96E09 287 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 ANTXR1Q9H6X2 564 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 C1orf115Q9H7X2 142 aa14.16□□□□□ -0.14
SDCBP-211ENST00000523441 PARP14Q460N5 1801 aa14.15□□□□□ -0.14
SDCBP-211ENST00000523441 DCDC2CA8MYV0 355 aa14.15□□□□□ -0.14
SDCBP-211ENST00000523441 KIAA0355O15063 1070 aa14.15□□□□□ -0.14
SDCBP-211ENST00000523441 SURF6O75683 361 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms