RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 CD44P16070 742 aaKnown RBP11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 ZNF174Q15697 407 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 UBAC1Q9BSL1 405 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 ZBTB3Q9H5J0 574 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 VPS54Q9P1Q0 977 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 NCK2O43639 380 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 ATP5JP18859 108 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 ADORA1P30542 326 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 CCDC70Q6NSX1 233 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 KRT26Q7Z3Y9 468 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 BRAPQ7Z569 592 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 IQUBQ8NA54 791 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 ZNF483Q8TF39 744 aaPredicted RBP11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 SPDL1Q96EA4 605 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 MED15Q96RN5 788 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 TACO1Q9BSH4 297 aaKnown RBP11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 DNAJC5Q9H3Z4 198 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 MFAP3LO75121 409 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 PPFIA2O75334 1257 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 RPS6KA3P51812 740 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 EXOSC10Q01780 885 aaKnown RBP11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 TMEM67Q5HYA8 995 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 CEP85LQ5SZL2 805 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 FCHSD1Q86WN1 690 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 CABS1Q96KC9 395 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 BPIFA3Q9BQP9 254 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 CSRNP2Q9H175 543 aa11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 DMGDHQ9UI17 866 aaKnown RBP11.3□□□□□ -0.6
PDGFRB-207ENST00000520579 SETBP1Q9Y6X0 1596 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 ZSCAN5CA6NGD5 496 aaPredicted RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 IFIT3O14879 490 aaKnown RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 GYPCP04921 128 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 SF3B2Q13435 895 aaKnown RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 HLTFQ14527 1009 aaKnown RBP eCLIP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 OXER1Q8TDS5 423 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 KCND1Q9NSA2 647 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 BAIAP2L1Q9UHR4 511 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 TRIM49BA6NDI0 452 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 SMIM23A6NLE4 172 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 TPP2P29144 1249 aaPredicted RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 KIAA0825Q8IV33 1275 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 NCOA7Q8NI08 942 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 MICAL1Q8TDZ2 1067 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 COG1Q8WTW3 980 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 WWC3Q9ULE0 1092 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 PDE2AO00408 941 aaPredicted RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 KCNJ6P48051 423 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 CTDSPL2Q05D32 466 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 LRRC1Q9BTT6 524 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 DACH1Q9UI36 760 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 TUBE1Q9UJT0 475 aa11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 EPN1Q9Y6I3 576 aaPredicted RBP11.29□□□□□ -0.6
PDGFRB-207ENST00000520579 BAZ2BQ9UIF8 2168 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 KIDINS220Q9ULH0 1771 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 ZBTB43O43298 467 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 USP14P54578 494 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 PTPN12Q05209 780 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 WHAMMP3Q1A5X7 153 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 TOM1L2Q6ZVM7 507 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 MSANTD4Q8NCY6 345 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 ZNF274Q96GC6 653 aaPredicted RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 PUS7LQ9H0K6 701 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 ARHGEF28Q8N1W1 1705 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 RNF113AO15541 343 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 HSF2BPO75031 334 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 AKNAD1Q5T1N1 836 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 IQCA1Q86XH1 822 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 TMX4Q9H1E5 349 aaPredicted RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 HPS5Q9UPZ3 1129 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 USP42Q9H9J4 1324 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 BUB1O43683 1085 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 KLK7P49862 253 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 TBX2Q13207 712 aaPredicted RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 GCKRQ14397 625 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 TATDN2Q93075 761 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 SAAL1Q96ER3 474 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 CCDC43Q96MW1 224 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 RAB21Q9UL25 225 aa11.28□□□□□ -0.6
PDGFRB-207ENST00000520579 FLT4P35916 1363 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 USP5P45974 858 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 NR1I3Q14994 352 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 PDCD2Q16342 344 aaPredicted RBP11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 USPL1Q5W0Q7 1092 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 ATL3Q6DD88 541 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 C3orf20Q8ND61 904 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 MLXIPQ9HAP2 919 aa11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 TTF2Q9UNY4 1162 aaKnown RBP11.27□□□□□ -0.6
PDGFRB-207ENST00000520579 NEURL1BA8MQ27 555 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 TRIM21P19474 475 aaKnown RBP11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 ANTXR2P58335 489 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 HDLBPQ00341 1268 aaKnown RBP11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 ARID5AQ03989 594 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 GET4Q7L5D6 327 aaPredicted RBP11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 OR2W6PQ8NHA6 318 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 HAUS7Q99871 368 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 GGT7Q9UJ14 662 aa11.27□□□□□ -0.61
PDGFRB-207ENST00000520579 GDAQ9Y2T3 454 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms