RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SETD1BQ9UPS6 1966 aaKnown RBP14.12□□□□□ -0.15
USP53-209ENST00000514665 GOLGA6CA6NDK9 693 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 KLRF2D3W0D1 207 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 GOLGA6DP0CG33 693 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 HARSP12081 509 aaKnown RBP14.12□□□□□ -0.15
USP53-209ENST00000514665 TNFAIP3P21580 790 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 PTPROQ16827 1216 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 MFSD14BQ5SR56 506 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 SPATA1Q5VX52 437 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 GOLGA6AQ9NYA3 693 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 SPOPO43791 374 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 SF3A3Q12874 501 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP53-209ENST00000514665 PPP1R7Q15435 360 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 ASIC2Q16515 512 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 FBF1Q8TES7 1133 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 RBM17Q96I25 401 aaKnown RBP14.12□□□□□ -0.15
USP53-209ENST00000514665 CDCA7Q9BWT1 371 aaPredicted RBP14.12□□□□□ -0.15
USP53-209ENST00000514665 GOLGA6BA6NDN3 693 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 SNAP23O00161 211 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 GTF2IP78347 998 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 CALCOCO2Q13137 446 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 GPR161Q8N6U8 529 aaKnown RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 RASGRP4Q8TDF6 673 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 KCNK9Q9NPC2 374 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 TRPM1Q7Z4N2 1603 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 ATP1A3P13637 1013 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 CCDC114Q96M63 670 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 ARPP21Q9UBL0 812 aaPredicted RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 MTRF1LQ9UGC7 380 aaKnown RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 PARP3Q9Y6F1 533 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 KIF1BO60333 1816 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 DDX39AO00148 427 aaKnown RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 CIAO1O76071 339 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 ZSWIM5Q9P217 1185 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 MED23Q9ULK4 1368 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 PLEKHG1Q9ULL1 1385 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 CPSF1Q10570 1443 aaKnown RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 CFBP00751 764 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 BIRC3Q13489 604 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 VWA3BQ502W6 1294 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 FNBP4Q8N3X1 1017 aaPredicted RBP14.11□□□□□ -0.15
USP53-209ENST00000514665 TRIML1Q8N9V2 468 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 RDH13Q8NBN7 331 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 PPP1R14CQ8TAE6 165 aa14.11□□□□□ -0.15
USP53-209ENST00000514665 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.11□□□□□ -0.15
USP53-209ENST00000514665 CCDC169A6NNP5 214 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 CASP14P31944 242 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 ADD2P35612 726 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 CPXCR1Q8N123 301 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 PPP1R13BQ96KQ4 1090 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 DNM3Q9UQ16 869 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 PCDHB13Q9Y5F0 798 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 CALRP27797 417 aaKnown RBP14.1□□□□□ -0.15
USP53-209ENST00000514665 KCNQ4P56696 695 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 DYNLL1P63167 89 aaKnown RBP14.1□□□□□ -0.15
USP53-209ENST00000514665 TOB2Q14106 344 aaPredicted RBP14.1□□□□□ -0.15
USP53-209ENST00000514665 NBPF14Q5TI25 921 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 CCDC26Q8TAB7 109 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 RASSF4Q9H2L5 321 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 SLC39A2Q9NP94 309 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 PSDA5PKW4 1024 aaPredicted RBP14.1□□□□□ -0.15
USP53-209ENST00000514665 NSRP1Q9H0G5 558 aaKnown RBP14.1□□□□□ -0.15
USP53-209ENST00000514665 MTUS1Q9ULD2 1270 aa14.1□□□□□ -0.15
USP53-209ENST00000514665 LRRC47Q8N1G4 583 aaKnown RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 CCDC51Q96ER9 411 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 IQCGQ9H095 443 aaKnown RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 FRMPD2Q68DX3 1309 aaPredicted RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 CYP2D7A0A087X1C5 515 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 ARHGEF35A5YM69 484 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 NAP1L4Q99733 375 aaKnown RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 LZTS2Q9BRK4 669 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 LOC102724428A0A0B4J2F2 783 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 GTPBP6O43824 516 aaPredicted RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 STX10O60499 249 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 GCNT3O95395 438 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 KRT5P13647 590 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 DNM2P50570 870 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 GTF2A1P52655 376 aaPredicted RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 SIK1P57059 783 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 ANKS4BQ8N8V4 417 aa14.09□□□□□ -0.15
USP53-209ENST00000514665 EPN1Q9Y6I3 576 aaPredicted RBP14.09□□□□□ -0.15
USP53-209ENST00000514665 HGSO14964 777 aaPredicted RBP14.08□□□□□ -0.15
USP53-209ENST00000514665 TTC31Q49AM3 519 aaPredicted RBP14.08□□□□□ -0.15
USP53-209ENST00000514665 SFMBT2Q5VUG0 894 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 DPP8Q6V1X1 898 aaPredicted RBP14.08□□□□□ -0.15
USP53-209ENST00000514665 IFT20Q8IY31 132 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 LCORLQ8N3X6 602 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 MYCT1Q8N699 235 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 PGBD1Q96JS3 809 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 TMEM94Q12767 1356 aa14.08□□□□□ -0.15
USP53-209ENST00000514665 EFCAB8A8MWE9 144 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 H7C1D1 291 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 EXOC3O60645 756 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 ECM2O94769 699 aaPredicted RBP14.08□□□□□ -0.16
USP53-209ENST00000514665 RPN1P04843 607 aaKnown RBP14.08□□□□□ -0.16
USP53-209ENST00000514665 NLRP10Q86W26 655 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 SAMSN1Q9NSI8 373 aaKnown RBP14.08□□□□□ -0.16
USP53-209ENST00000514665 DDX41Q9UJV9 622 aaKnown RBP14.08□□□□□ -0.16
USP53-209ENST00000514665 SERPINA10Q9UK55 444 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 NLRP1Q9C000 1473 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms