RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DENND2AQ9ULE3 1009 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 TADA3O75528 432 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 PEX19P40855 299 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 MTMR3Q13615 1198 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 TSNAXIP1Q2TAA8 658 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 INTS8Q75QN2 995 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 HOOK3Q86VS8 718 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 RBM17Q96I25 401 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 FAM169AQ9Y6X4 670 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 CHUKO15111 745 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 KRT13P13646 458 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 DESP17661 470 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 PPP1R2P41236 205 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 PROSER3Q2NL68 480 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 SPATA1Q5VX52 437 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 DDX12PQ92771 950 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 DSCC1Q9BVC3 393 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 STIM2Q9P246 746 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 THRAP3Q9Y2W1 955 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 RNF17Q9BXT8 1623 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 MYCNP04198 464 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 PUM3Q15397 648 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 RBM26Q5T8P6 1007 aaKnown RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 EAF2Q96CJ1 260 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-211ENST00000513346 XAGE2Q96GT9 111 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 KCNK9Q9NPC2 374 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 MAPK8IP1Q9UQF2 711 aa12.51□□□□□ -0.41
TCOF1-211ENST00000513346 MBD4O95243 580 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 CALM1P0DP23 149 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 CALM2P0DP24 149 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 CALM3P0DP25 149 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 PLCD1P51178 756 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 CROCCP2Q86T23 111 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 PGBD1Q96JS3 809 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 POLR3EQ9NVU0 708 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 FBXO3Q9UK99 471 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 TCP1P17987 556 aaKnown RBP12.5□□□□□ -0.41
TCOF1-211ENST00000513346 NAPAP54920 295 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 RNASE9P60153 205 aaKnown RBP12.5□□□□□ -0.41
TCOF1-211ENST00000513346 KRT71Q3SY84 523 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 FTOQ9C0B1 505 aaKnown RBP eCLIP12.5□□□□□ -0.412e-6■□□□□ 9.3
TCOF1-211ENST00000513346 VCXQ9H320 206 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 DEXIO95424 95 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 ATP5JP18859 108 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 CSGALNACT2Q8N6G5 542 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 PLVAPQ9BX97 442 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 FRMD3A2A2Y4 597 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 H0YIN7 160 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 UFL1O94874 794 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 HIBADHP31937 336 aaKnown RBP12.5□□□□□ -0.41
TCOF1-211ENST00000513346 ZNF174Q15697 407 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 ZNF827Q17R98 1081 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 LINC00301Q8NCQ3 95 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 NSUN7Q8NE18 718 aaKnown RBP12.5□□□□□ -0.41
TCOF1-211ENST00000513346 HYOU1Q9Y4L1 999 aa12.5□□□□□ -0.41
TCOF1-211ENST00000513346 ALDH3A1P30838 453 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CASP14P31944 242 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 GUCY2FP51841 1108 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 PPARDQ03181 441 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 SLC39A14Q15043 492 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 TTLL7Q6ZT98 887 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 TBC1D31Q96DN5 1066 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 IFIH1Q9BYX4 1025 aaKnown RBP12.49□□□□□ -0.41
TCOF1-211ENST00000513346 EPC1Q9H2F5 836 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 ANKARQ7Z5J8 1434 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 RPSAP08865 295 aaKnown RBP12.49□□□□□ -0.41
TCOF1-211ENST00000513346 ATP1A3P13637 1013 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CALML3P27482 149 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 MCM7P33993 719 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 E2F5Q15329 346 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 KCTD16Q68DU8 428 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 KLHL7Q8IXQ5 586 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 NELFBQ8WX92 580 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 PPP1R12CQ9BZL4 782 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 PSD3Q9NYI0 1048 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 JCADQ9P266 1359 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 LRRIQ1Q96JM4 1722 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 KCNJ6P48051 423 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CCDC38Q502W7 563 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 DTHD1Q6ZMT9 781 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 WDR17Q8IZU2 1322 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CROCC2H7BZ55 1655 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 ERCC5P28715 1186 aaPredicted RBP12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CCZ1BP86790 482 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CCZ1P86791 482 aaPredicted RBP12.49□□□□□ -0.41
TCOF1-211ENST00000513346 CETN1Q12798 172 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 GRM1Q13255 1194 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 NECTIN1Q15223 517 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 PTPN21Q16825 1174 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 STXBP4Q6ZWJ1 553 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 ERMNQ8TAM6 284 aa12.49□□□□□ -0.41
TCOF1-211ENST00000513346 ZNF526Q8TF50 670 aaPredicted RBP12.49□□□□□ -0.41
TCOF1-211ENST00000513346 TAF5LO75529 589 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 EPHB4P54760 987 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 ZBTB16Q05516 673 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 PHKBQ93100 1093 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 TACO1Q9BSH4 297 aaKnown RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 ACTR5Q9H9F9 607 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 NKIRAS1Q9NYS0 192 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 351.9 ms