RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 ZGPATQ8N5A5 531 aaKnown RBP11.35□□□□□ -0.59
NUP54-211ENST00000512151 LENG1Q96BZ8 264 aaPredicted RBP11.35□□□□□ -0.59
NUP54-211ENST00000512151 MSRAQ9UJ68 235 aa11.35□□□□□ -0.59
NUP54-211ENST00000512151 IL16Q14005 1332 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 SPDYE16A6NNV3 312 aaPredicted RBP11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L15C9J2P7 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L13C9JLJ4 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L11C9JVI0 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L18D6R9N7 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L22D6RA61 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L17D6RBQ6 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L19D6RCP7 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L20D6RJB6 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 PI4K2BG5E9Z4 385 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 RFXAPO00287 272 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 ZBTB22O15209 634 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 MYOGP15173 224 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 RABGGTBP53611 331 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 NHLH1Q02575 133 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 USP17L24Q0WX57 530 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 PPIGQ13427 754 aaKnown RBP eCLIP11.34□□□□□ -0.59
NUP54-211ENST00000512151 SKIV2LQ15477 1246 aaKnown RBP11.34□□□□□ -0.59
NUP54-211ENST00000512151 RAB30Q15771 203 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 KRT40Q6A162 431 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 SH3RF3Q8TEJ3 882 aaPredicted RBP11.34□□□□□ -0.59
NUP54-211ENST00000512151 C12orf42Q96LP6 360 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 TOX2Q96NM4 488 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 XPNPEP3Q9NQH7 507 aa11.34□□□□□ -0.59
NUP54-211ENST00000512151 BRWD1Q9NSI6 2320 aa11.33□□□□□ -0.59
NUP54-211ENST00000512151 DCDC2CA8MYV0 355 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 TAL1P17542 331 aaPredicted RBP11.33□□□□□ -0.6
NUP54-211ENST00000512151 CCDC27Q2M243 656 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 LBX2Q6XYB7 198 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 METTL16Q86W50 562 aaKnown RBP11.33□□□□□ -0.6
NUP54-211ENST00000512151 TEX11Q8IYF3 940 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 HERVK_113Q902F9 699 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 MOV10L1Q9BXT6 1211 aaKnown RBP11.33□□□□□ -0.6
NUP54-211ENST00000512151 SIL1Q9H173 461 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 PI4KBQ9UBF8 816 aa11.33□□□□□ -0.6
NUP54-211ENST00000512151 PDS5AQ29RF7 1337 aaKnown RBP11.32□□□□□ -0.6
NUP54-211ENST00000512151 EPOPA6NHQ4 379 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 ANP32CO43423 234 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 VCAM1P19320 739 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 SPTY2D1Q68D10 685 aaPredicted RBP11.32□□□□□ -0.6
NUP54-211ENST00000512151 PI16Q6UXB8 463 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 TBC1D9Q6ZT07 1266 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 ERICH6Q7L0X2 663 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 NSUN4Q96CB9 384 aaKnown RBP11.32□□□□□ -0.6
NUP54-211ENST00000512151 SLC28A3Q9HAS3 691 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 CEP126Q9P2H0 1117 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 MTCH2Q9Y6C9 303 aa11.32□□□□□ -0.6
NUP54-211ENST00000512151 ADAMTS4O75173 837 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 GH2P01242 217 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 RARBP10826 455 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
NUP54-211ENST00000512151 MIER1Q8N108 512 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 ACER1Q8TDN7 264 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 MAML3Q96JK9 1138 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 PPP1R12CQ9BZL4 782 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 USP44Q9H0E7 712 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 CDK5RAP2Q96SN8 1893 aa11.31□□□□□ -0.6
NUP54-211ENST00000512151 PRR33A8MZF0 331 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 MAP4K4O95819 1239 aaPredicted RBP11.3□□□□□ -0.6
NUP54-211ENST00000512151 ERCC3P19447 782 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 ACLYP53396 1101 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 TIMM10P62072 90 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 CCDC184Q52MB2 194 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 PPP2R2DQ66LE6 453 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 PSRC1Q6PGN9 363 aaPredicted RBP11.3□□□□□ -0.6
NUP54-211ENST00000512151 RNF180Q86T96 592 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 MAPKAPK5Q8IW41 473 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 FBXL18Q96ME1 805 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 RPAP3Q9H6T3 665 aaPredicted RBP11.3□□□□□ -0.6
NUP54-211ENST00000512151 STARD7Q9NQZ5 370 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 GINM1Q9NU53 330 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 PALD1Q9ULE6 856 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 ZNF521Q96K83 1311 aa11.3□□□□□ -0.6
NUP54-211ENST00000512151 MYADML2A6NDP7 307 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 STRNO43815 780 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 CIAO1O76071 339 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 POU3F3P20264 500 aaPredicted RBP11.29□□□□□ -0.6
NUP54-211ENST00000512151 CYP2C18P33260 490 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 CDK7P50613 346 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 CCSAPQ6IQ19 270 aaPredicted RBP11.29□□□□□ -0.6
NUP54-211ENST00000512151 CCDC174Q6PII3 467 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 FOXP4Q8IVH2 680 aaPredicted RBP11.29□□□□□ -0.6
NUP54-211ENST00000512151 ANKS1AQ92625 1134 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 PHOX2BQ99453 314 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 FEZ1Q99689 392 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 SPATC1LQ9H0A9 340 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 DHX36Q9H2U1 1008 aaKnown RBP11.29□□□□□ -0.6
NUP54-211ENST00000512151 IL23AQ9NPF7 189 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 ZNFX1Q9P2E3 1918 aaKnown RBP11.29□□□□□ -0.6
NUP54-211ENST00000512151 TRANK1O15050 2925 aa11.29□□□□□ -0.6
NUP54-211ENST00000512151 ZNF865P0CJ78 1059 aaPredicted RBP11.28□□□□□ -0.6
NUP54-211ENST00000512151 OTOP2Q7RTS6 562 aa11.28□□□□□ -0.6
NUP54-211ENST00000512151 CRACR2BQ8N4Y2 399 aaPredicted RBP11.28□□□□□ -0.6
NUP54-211ENST00000512151 TMEM199Q8N511 208 aa11.28□□□□□ -0.6
NUP54-211ENST00000512151 KLHDC9Q8NEP7 349 aa11.28□□□□□ -0.6
NUP54-211ENST00000512151 TGFBRAP1Q8WUH2 860 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms