RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 ZC3H15Q8WU90 426 aaKnown RBP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 ANP32EQ9BTT0 268 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 SPZ1Q9BXG8 430 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 TMEM39BQ9GZU3 492 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 DEFB129Q9H1M3 183 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 SH2D4AQ9H788 454 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 ARHGEF10LQ9HCE6 1279 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 CLIP2Q9UDT6 1046 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 PGAP2Q9UHJ9 254 aa9.42□□□□□ -0.9
TOPBP1-202ENST00000503338 SHTN1A0MZ66 631 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 PALM3A6NDB9 673 aaPredicted RBP9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 DCAF8L1A6NGE4 600 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 GLTPD2A6NH11 291 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 hCG_1984214I3L0E3 225 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 SNHG28P0DPA3 235 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 PDHBP11177 359 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 CAP2P40123 477 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 EPS15P42566 896 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 KRT85P78386 507 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 FUT2Q10981 343 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 SUPT20HL1Q3ZLR7 823 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 USP50Q70EL3 339 aaPredicted RBP9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 CDC37L1Q7L3B6 337 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 ZNF713Q8N859 430 aaPredicted RBP9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 GMCL1P1Q8NEA9 526 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 DCAF4Q8WV16 495 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 PHKBQ93100 1093 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 DCPSQ96C86 337 aaKnown RBP9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 BRMS1Q9HCU9 246 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 SH3GLB2Q9NR46 395 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 MAD2L2Q9UI95 211 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 CFAP45Q9UL16 551 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 MYH8P13535 1937 aa9.41□□□□□ -0.9
TOPBP1-202ENST00000503338 CNTNAP5Q8WYK1 1306 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 KLRF2D3W0D1 207 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 CTNND1O60716 968 aaKnown RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 EGFRP00533 1210 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 GH2P01242 217 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 NCLP19338 710 aaKnown RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 CALML3P27482 149 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 GNL2Q13823 731 aaKnown RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 ANGEL2Q5VTE6 544 aaKnown RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 SRBD1Q8N5C6 995 aaKnown RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 CCDC148Q8NFR7 591 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 TRPM4Q8TD43 1214 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 CCDC12Q8WUD4 166 aaPredicted RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 TEPSINQ96N21 525 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 ZNF396Q96N95 335 aaPredicted RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 ZNF341Q9BYN7 854 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 SCAND2PQ9GZW5 306 aaPredicted RBP9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 GOPCQ9HD26 462 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 GGA3Q9NZ52 723 aa9.4□□□□□ -0.9
TOPBP1-202ENST00000503338 GREB1LQ9C091 1923 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 FAM196BA6NMK8 535 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 GDF11O95390 407 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 PLEKHA8P1O95397 391 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SCG2P13521 617 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 EEF2P13639 858 aaKnown RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 GUCY1A2P33402 732 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SLC1A4P43007 532 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 ATP2B2Q01814 1243 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 ZNF543Q08ER8 600 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 TRAF1Q13077 416 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 RESTQ13127 1097 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SEPT2Q15019 361 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 PFKFB3Q16875 520 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 FOXD4L5Q5VV16 416 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 KRT40Q6A162 431 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 MCTP1Q6DN14 999 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 GALNT17Q6IS24 598 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 USP48Q86UV5 1035 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 PNMA8AQ86V59 439 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SULF1Q8IWU6 871 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 TMEM87AQ8NBN3 555 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 FOXD4L4Q8WXT5 416 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 RRP36Q96EU6 259 aaKnown RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 GMCL1Q96IK5 515 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 FOXP1Q9H334 677 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SEC63Q9UGP8 760 aaKnown RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 ZBTB21Q9ULJ3 1066 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 V9GY48 417 aaPredicted RBP9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 SIPA1L1O43166 1804 aa9.39□□□□□ -0.91
TOPBP1-202ENST00000503338 MMP1P03956 469 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 U2AF2P26368 475 aaKnown RBP eCLIP9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 EPHX2P34913 555 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 NF2P35240 595 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 PKN1Q16512 942 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 CCDC96Q2M329 555 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 SLFN13Q68D06 897 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 USP17L2Q6R6M4 530 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 MIGA2Q7L4E1 593 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 LRRC47Q8N1G4 583 aaKnown RBP9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 STAG2Q8N3U4 1231 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 CCDC82Q8N4S0 544 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 RIOX1Q9H6W3 641 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 AS3MTQ9HBK9 375 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 ZNF112Q9UJU3 913 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 TMX2Q9Y320 296 aa9.38□□□□□ -0.91
TOPBP1-202ENST00000503338 ELP1O95163 1332 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms