RNA–Protein interactions for RNA: ENST00000498020.1

HLA-DMB-262, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 4,569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-262ENST00000498020 CCDC112Q8NEF3 446 aa9.09□□□□□ -0.96
HLA-DMB-262ENST00000498020 LEMD3Q9Y2U8 911 aa9.09□□□□□ -0.96
HLA-DMB-262ENST00000498020 V9GY48 417 aaPredicted RBP9.09□□□□□ -0.96
HLA-DMB-262ENST00000498020 STK36Q9NRP7 1315 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 NDUFA8P51970 172 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 CCDC12Q8WUD4 166 aaPredicted RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 RNF26Q9BY78 433 aaPredicted RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 KCNJ14Q9UNX9 436 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 TMC6Q7Z403 805 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 CCDC148Q8NFR7 591 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 BRIP1Q9BX63 1249 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 LY9Q9HBG7 655 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 KCPQ6ZWJ8 1503 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 BTBD18B2RXH4 712 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 DYNC1I1O14576 645 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 RRP9O43818 475 aaKnown RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 DDNO94850 711 aaPredicted RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 FDPSP14324 419 aaKnown RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 PTPN14Q15678 1187 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 TIGD1Q96MW7 591 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 FOXP1Q9H334 677 aaPredicted RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 PODXL2Q9NZ53 605 aa9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 ZBTB12Q9Y330 459 aaPredicted RBP9.08□□□□□ -0.96
HLA-DMB-262ENST00000498020 TOP1P11387 765 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 TNNT1P13805 278 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 MAPKAPK5Q8IW41 473 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 CELF1Q92879 486 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 PDCL3Q9H2J4 239 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 BMP2KQ9NSY1 1161 aaPredicted RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 RGPD5Q99666 1765 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 CNTNAP4Q9C0A0 1308 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 DDAH1O94760 285 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 IGDCC4Q8TDY8 1250 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 NBPF3Q9H094 633 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 B4DLN1 442 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 RGL2O15211 777 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 SKILP12757 684 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 NT5C2P49902 561 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 MRPL12P52815 198 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 UBASH3AP57075 661 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 DYNLL1P63167 89 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 MYL5Q02045 173 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 DHX37Q8IY37 1157 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 DPF3Q92784 378 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 MRFAP1L1Q96HT8 127 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 AIFM3Q96NN9 605 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 CNOT7Q9UIV1 285 aaKnown RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 COL9A3Q14050 684 aaPredicted RBP9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 LINC00116Q8NCU8 138 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 TBC1D22AQ8WUA7 517 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 HPS5Q9UPZ3 1129 aa9.07□□□□□ -0.96
HLA-DMB-262ENST00000498020 CDC27P30260 824 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 PABPC4Q13310 644 aaKnown RBP eCLIP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 SPOUT1Q5T280 376 aaKnown RBP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 FAM84BQ96KN1 310 aaPredicted RBP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 RIC1Q4ADV7 1423 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 MMP1P03956 469 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 PPFIBP1Q86W92 1011 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 RAET1EQ8TD07 263 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 C16orf45Q96MC5 204 aaPredicted RBP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 FUCA2Q9BTY2 467 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 EPB41L4AQ9HCS5 686 aaPredicted RBP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 GJB4Q9NTQ9 266 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 IFNKQ9P0W0 207 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 IGSF3O75054 1194 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 RBM10P98175 930 aaKnown RBP9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 RASSF7Q02833 373 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 SLC5A4Q9NY91 659 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 XDHP47989 1333 aa9.06□□□□□ -0.96
HLA-DMB-262ENST00000498020 PNMA8AQ86V59 439 aaPredicted RBP9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 NCAPG2Q86XI2 1143 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 FMR1NBQ8N0W7 255 aaPredicted RBP9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 TXLNBQ8N3L3 684 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 INCENPQ9NQS7 918 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 VPS54Q9P1Q0 977 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 USP17L3A6NCW0 530 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 USP17L4A6NCW7 530 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 CDC25BP30305 580 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 SLC10A5Q5PT55 438 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 KLHL10Q6JEL2 608 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 USP17L1Q7RTZ2 530 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 MICALL2Q8IY33 904 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 CMTR1Q8N1G2 835 aaKnown RBP9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 FERMT2Q96AC1 680 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 OTUD5Q96G74 571 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 GOLPH3LQ9H4A5 285 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 IMPACTQ9P2X3 320 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 TCRBV5S4A2TA0A5A2 114 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 CACNB3P54284 484 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 TFAP4Q01664 338 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 MECOMQ03112 1051 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 C11orf57Q6ZUT1 292 aaPredicted RBP9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 KIF18AQ8NI77 898 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 DHX58Q96C10 678 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 SH2D4AQ9H788 454 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 PAXBP1Q9Y5B6 917 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 POLR2DO15514 142 aaKnown RBP9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 GRAPQ13588 217 aa9.05□□□□□ -0.96
HLA-DMB-262ENST00000498020 FAM47AQ5JRC9 791 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms