RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PLCH1Q4KWH8 1693 aa9.23□□□□□ -0.93
VIM-207ENST00000495528 ADGRB1O14514 1584 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 MEGF11A6BM72 1044 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 MINDY4BA8MYZ0 360 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 AOC2O75106 756 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 ZNF252P-AS1Q0IIN9 211 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 R3HDM1Q15032 1099 aaKnown RBP9.22□□□□□ -0.93
VIM-207ENST00000495528 CHRNA2Q15822 529 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 GPBAR1Q8TDU6 330 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 CEP41Q9BYV8 373 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 CYP8B1Q9UNU6 501 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 AP4E1Q9UPM8 1137 aa9.22□□□□□ -0.93
VIM-207ENST00000495528 GBP2P32456 591 aaPredicted RBP9.21□□□□□ -0.94
VIM-207ENST00000495528 ZNF76P36508 570 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 PREPP48147 710 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 ANKRD34AQ69YU3 496 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 HS2ST1Q7LGA3 356 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 RELL1Q8IUW5 271 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 SPOCK3Q9BQ16 436 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 PCGF6Q9BYE7 350 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 SPATA31A1Q5TZJ5 1347 aa9.21□□□□□ -0.94
VIM-207ENST00000495528 ABCA3Q99758 1704 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 MSTNO14793 375 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 TRIM37O94972 964 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 RLBP1P12271 317 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 TFE3P19532 575 aaPredicted RBP9.2□□□□□ -0.94
VIM-207ENST00000495528 ZC3H6P61129 1189 aaKnown RBP9.2□□□□□ -0.94
VIM-207ENST00000495528 FANCCQ00597 558 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 SEPT6Q14141 434 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 DOC2BQ14184 412 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 C9orf131Q5VYM1 1079 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 Q6ZS46 218 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 SMG8Q8ND04 991 aaKnown RBP9.2□□□□□ -0.94
VIM-207ENST00000495528 TP53INP1Q96A56 240 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 CAMKK2Q96RR4 588 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 CDK19Q9BWU1 502 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 KRT82Q9NSB4 513 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 KBTBD4Q9NVX7 518 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 USP35Q9P2H5 1018 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 PCDHA4Q9UN74 947 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 EIF3AQ14152 1382 aaKnown RBP9.2□□□□□ -0.94
VIM-207ENST00000495528 KIAA0232Q92628 1395 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 RAB3GAP2Q9H2M9 1393 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 TULP4Q9NRJ4 1543 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 ADGRB2O60241 1585 aa9.2□□□□□ -0.94
VIM-207ENST00000495528 NRAPQ86VF7 1730 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 TRPM3Q9HCF6 1732 aaPredicted RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 SCAMP3O14828 347 aaKnown RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 GAS2O43903 313 aaKnown RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 SLFN14P0C7P3 912 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 ADH5P11766 374 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 PTPN11Q06124 597 aaPredicted RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 SOX4Q06945 474 aaPredicted RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 AGMOQ6ZNB7 445 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 FAM196AQ6ZSG2 479 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 DYMQ7RTS9 669 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 PHC3Q8NDX5 983 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 JARID2Q92833 1246 aaPredicted RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 RNF34Q969K3 372 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 SUGCTQ9HAC7 445 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 TPSG1Q9NRR2 321 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 PPP1R9AQ9ULJ8 1098 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 CSADQ9Y600 493 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 LRP5O75197 1615 aa9.19□□□□□ -0.94
VIM-207ENST00000495528 COL14A1Q05707 1796 aaKnown RBP9.19□□□□□ -0.94
VIM-207ENST00000495528 E9PSI1 815 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 PROCP04070 461 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 EVA1CP58658 441 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 RPS26P62854 115 aaKnown RBP9.18□□□□□ -0.94
VIM-207ENST00000495528 FAM160A1Q05DH4 1040 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 KIF4BQ2VIQ3 1234 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 NBPF8Q3BBV2 869 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 DZIP1LQ8IYY4 767 aaKnown RBP9.18□□□□□ -0.94
VIM-207ENST00000495528 UTP4Q969X6 686 aaKnown RBP9.18□□□□□ -0.94
VIM-207ENST00000495528 TMEM74Q96NL1 305 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 ALS2Q96Q42 1657 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 RSRP1Q9BUV0 290 aa9.18□□□□□ -0.94
VIM-207ENST00000495528 DISP2A7MBM2 1401 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 ACEP12821 1306 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 TIAF1O95411 115 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 PF4P02776 101 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 HNRNPUQ00839 825 aaKnown RBP eCLIP9.17□□□□□ -0.94
VIM-207ENST00000495528 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.17□□□□□ -0.94
VIM-207ENST00000495528 ERMP1Q7Z2K6 904 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 GAL3ST3Q96A11 431 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 FAM46AQ96IP4 442 aaKnown RBP9.17□□□□□ -0.94
VIM-207ENST00000495528 SSBP4Q9BWG4 385 aaPredicted RBP9.17□□□□□ -0.94
VIM-207ENST00000495528 MIR1-1HGQ9H1L0 117 aa9.17□□□□□ -0.94
VIM-207ENST00000495528 DCDC2CA8MYV0 355 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 TMPRSS2O15393 492 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 ID3Q02535 119 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 CAMK2GQ13555 558 aaPredicted RBP9.16□□□□□ -0.94
VIM-207ENST00000495528 PWP1Q13610 501 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 ZNF394Q53GI3 561 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 ARMC10Q8N2F6 343 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 METTL5Q9NRN9 209 aaKnown RBP9.16□□□□□ -0.94
VIM-207ENST00000495528 PCDHGB7Q9Y5F8 929 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 THSD7AQ9UPZ6 1657 aa9.16□□□□□ -0.94
VIM-207ENST00000495528 ATP7BP35670 1465 aa9.15□□□□□ -0.94
VIM-207ENST00000495528 BMP3P12645 472 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms