RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 WBP1LQ9NX94 342 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 SAGE1Q9NXZ1 904 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 PNMA3Q9UL41 463 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 TAF6LQ9Y6J9 622 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 ERICH2A1L162 156 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 PDHXO00330 501 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 RAD21O60216 631 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 NMT2O60551 498 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 HMGB1P09429 215 aaKnown RBP20.12■□□□□ 0.81
HDAC6-235ENST00000495515 MCM5P33992 734 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 FAM43AQ8N2R8 423 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 NEK1Q96PY6 1258 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 MTA3Q9BTC8 594 aa20.12■□□□□ 0.81
HDAC6-235ENST00000495515 FOXN1O15353 648 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 TOP1P11387 765 aaKnown RBP20.11■□□□□ 0.81
HDAC6-235ENST00000495515 OSBPP22059 807 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 PSMA5P28066 241 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 NOVP48745 357 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 GPAT2Q6NUI2 795 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 MB21D2Q8IYB1 491 aaPredicted RBP20.11■□□□□ 0.81
HDAC6-235ENST00000495515 RASEFQ8IZ41 740 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 GMCL1P1Q8NEA9 526 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 PARK7Q99497 189 aaKnown RBP20.11■□□□□ 0.81
HDAC6-235ENST00000495515 ZKSCAN3Q9BRR0 538 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 ZFYVE28Q9HCC9 887 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 RNF186Q9NXI6 227 aa20.11■□□□□ 0.81
HDAC6-235ENST00000495515 TNKSO95271 1327 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 F5H6K3 240 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 TRPA1O75762 1119 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 VCAM1P19320 739 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 KLRC3Q07444 240 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 TAF1CQ15572 869 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-235ENST00000495515 TREML2Q5T2D2 321 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 LRRC47Q8N1G4 583 aaKnown RBP20.1■□□□□ 0.81
HDAC6-235ENST00000495515 SNX14Q9Y5W7 946 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 PHIPQ8WWQ0 1821 aa20.1■□□□□ 0.81
HDAC6-235ENST00000495515 GREB1LQ9C091 1923 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L15C9J2P7 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L13C9JLJ4 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L11C9JVI0 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L18D6R9N7 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L22D6RA61 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L17D6RBQ6 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L19D6RCP7 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L20D6RJB6 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 IFIT3O14879 490 aaKnown RBP20.09■□□□□ 0.81
HDAC6-235ENST00000495515 WDR46O15213 610 aaKnown RBP20.09■□□□□ 0.81
HDAC6-235ENST00000495515 HOXA7P31268 230 aaPredicted RBP20.09■□□□□ 0.81
HDAC6-235ENST00000495515 IRX3P78415 501 aaPredicted RBP20.09■□□□□ 0.81
HDAC6-235ENST00000495515 USP17L24Q0WX57 530 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 DGKZQ13574 1117 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 CYB5R4Q7L1T6 521 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 ANKS1AQ92625 1134 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 TMEM47Q9BQJ4 181 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 KAT14Q9H8E8 782 aa20.09■□□□□ 0.81
HDAC6-235ENST00000495515 UPF2Q9HAU5 1272 aaKnown RBP20.09■□□□□ 0.81
HDAC6-235ENST00000495515 PRC1O43663 620 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 IFIT1BQ5T764 474 aaKnown RBP20.08■□□□□ 0.81
HDAC6-235ENST00000495515 SLFN13Q68D06 897 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 SPICE1Q8N0Z3 855 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 ENAHQ8N8S7 591 aaPredicted RBP20.08■□□□□ 0.81
HDAC6-235ENST00000495515 NKX2-3Q8TAU0 364 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 TMEM87BQ96K49 555 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 CFHR5Q9BXR6 569 aa20.08■□□□□ 0.81
HDAC6-235ENST00000495515 RPAP3Q9H6T3 665 aaPredicted RBP20.08■□□□□ 0.81
HDAC6-235ENST00000495515 WDR19Q8NEZ3 1342 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 NDUFB10O96000 172 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 CTCFP49711 727 aaPredicted RBP20.07■□□□□ 0.8
HDAC6-235ENST00000495515 ANAPC15P60006 121 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 WTAPQ15007 396 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 TMEM67Q5HYA8 995 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 RCSD1Q6JBY9 416 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 DHX32Q7L7V1 743 aaKnown RBP20.07■□□□□ 0.8
HDAC6-235ENST00000495515 TMTC2Q8N394 836 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 SMCR8Q8TEV9 937 aaPredicted RBP20.07■□□□□ 0.8
HDAC6-235ENST00000495515 JAKMIP1Q96N16 626 aaKnown RBP20.07■□□□□ 0.8
HDAC6-235ENST00000495515 TANGO6Q9C0B7 1094 aa20.07■□□□□ 0.8
HDAC6-235ENST00000495515 SEC24BO95487 1268 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 SLC1A4P43007 532 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 ADCK5Q3MIX3 580 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 BLOC1S2Q6QNY1 142 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 CATSPERGQ6ZRH7 1159 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 CHST3Q7LGC8 479 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 GTF3C2Q8WUA4 911 aaPredicted RBP20.06■□□□□ 0.8
HDAC6-235ENST00000495515 GMCL1Q96IK5 515 aa20.06■□□□□ 0.8
HDAC6-235ENST00000495515 ASCC2Q9H1I8 757 aaPredicted RBP20.06■□□□□ 0.8
HDAC6-235ENST00000495515 BMP3P12645 472 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 ANTXR2P58335 489 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 CRHR2Q13324 411 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 SEC23AQ15436 765 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 KIAA1755Q5JYT7 1200 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 PNMA1Q8ND90 353 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 DCAF4Q8WV16 495 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 HOXC10Q9NYD6 342 aa20.05■□□□□ 0.8
HDAC6-235ENST00000495515 ISY1Q9ULR0 285 aaKnown RBP20.05■□□□□ 0.8
HDAC6-235ENST00000495515 LOC285556D6RIA3 1793 aa20.04■□□□□ 0.8
HDAC6-235ENST00000495515 TLR2O60603 784 aa20.04■□□□□ 0.8
HDAC6-235ENST00000495515 TBC1D8O95759 1140 aa20.04■□□□□ 0.8
HDAC6-235ENST00000495515 CYP2C8P10632 490 aa20.04■□□□□ 0.8
HDAC6-235ENST00000495515 GCLCP48506 637 aaPredicted RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms