RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 CCDC196A0A1B0GTZ2 297 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 CTDNEP1O95476 244 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 CDC27P30260 824 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 IREB2P48200 963 aaKnown RBP13.3□□□□□ -0.28
MCF2L-231ENST00000494043 PRKG1Q13976 671 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 GRM4Q14833 912 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 CTCFLQ8NI51 663 aaPredicted RBP13.3□□□□□ -0.28
MCF2L-231ENST00000494043 ZKSCAN4Q969J2 545 aaPredicted RBP13.3□□□□□ -0.28
MCF2L-231ENST00000494043 ARHGEF10LQ9HCE6 1279 aa13.3□□□□□ -0.28
MCF2L-231ENST00000494043 RBM28Q9NW13 759 aaKnown RBP13.3□□□□□ -0.28
MCF2L-231ENST00000494043 A0A1W2PRG0 241 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 USP17L5A8MUK1 530 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 TRAF5O00463 557 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 CPLX1O14810 134 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 KIF5BP33176 963 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 ADD1P35611 737 aaKnown RBP13.29□□□□□ -0.28
MCF2L-231ENST00000494043 MAP3K11Q16584 847 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 CHADLQ6NUI6 762 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 CPLX2Q6PUV4 134 aaKnown RBP13.29□□□□□ -0.28
MCF2L-231ENST00000494043 NSUN7Q8NE18 718 aaKnown RBP13.29□□□□□ -0.28
MCF2L-231ENST00000494043 GMCL1P1Q8NEA9 526 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 SMARCC2Q8TAQ2 1214 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 SH2D4AQ9H788 454 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 GPBP1L1Q9HC44 474 aaPredicted RBP13.29□□□□□ -0.28
MCF2L-231ENST00000494043 PICK1Q9NRD5 415 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 SMC3Q9UQE7 1217 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 MYH4Q9Y623 1939 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 OTOFQ9HC10 1997 aa13.29□□□□□ -0.28
MCF2L-231ENST00000494043 PTPDC1A2A3K4 754 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 JAK2O60674 1132 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 CDKL5O76039 1030 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 SNHG28P0DPA3 235 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 PDHBP11177 359 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 MAP3K9P80192 1104 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 NTRK3Q16288 839 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.28□□□□□ -0.28
MCF2L-231ENST00000494043 TMTC3Q6ZXV5 915 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 RASGRP2Q7LDG7 609 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 CCDC84Q86UT8 332 aaPredicted RBP13.28□□□□□ -0.28
MCF2L-231ENST00000494043 ACER1Q8TDN7 264 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 CWC22Q9HCG8 908 aaKnown RBP13.28□□□□□ -0.28
MCF2L-231ENST00000494043 MAD2L2Q9UI95 211 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 MTMR7Q9Y216 660 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 TMX2Q9Y320 296 aa13.28□□□□□ -0.28
MCF2L-231ENST00000494043 PALM3A6NDB9 673 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-231ENST00000494043 DTNBO60941 627 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 PLEKHA8P1O95397 391 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 PARP1P09874 1014 aaKnown RBP13.27□□□□□ -0.29
MCF2L-231ENST00000494043 IFNAR1P17181 557 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 PTPRAP18433 802 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 GJB2P29033 226 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 DDIT3P35638 169 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 ECE1P42892 770 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 GNAQP50148 359 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 HMGN5P82970 282 aaKnown RBP13.27□□□□□ -0.29
MCF2L-231ENST00000494043 FMR1Q06787 632 aaKnown RBP eCLIP13.27□□□□□ -0.29
MCF2L-231ENST00000494043 VGLL4Q14135 290 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 TTLL12Q14166 644 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-231ENST00000494043 ASPRV1Q53RT3 343 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 USP17L2Q6R6M4 530 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 ARMC9Q7Z3E5 817 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 DCAF4Q8WV16 495 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 GMCL1Q96IK5 515 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 WDR18Q9BV38 432 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 CSADQ9Y600 493 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 SNCAIPQ9Y6H5 919 aa13.27□□□□□ -0.29
MCF2L-231ENST00000494043 F5H6K3 240 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 NDUFB10O96000 172 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 KLRC3Q07444 240 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 ZNF543Q08ER8 600 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 FUT2Q10981 343 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 SLFN13Q68D06 897 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 MOB2Q70IA6 237 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 ANKRD13AQ8IZ07 590 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 STAG2Q8N3U4 1231 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 DDX11Q96FC9 970 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 FEZ1Q99689 392 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 ZNF408Q9H9D4 720 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 AS3MTQ9HBK9 375 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 GOPCQ9HD26 462 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 STK36Q9NRP7 1315 aa13.26□□□□□ -0.29
MCF2L-231ENST00000494043 FRMPD2Q68DX3 1309 aaPredicted RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 CNTNAP5Q8WYK1 1306 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 KLRF2D3W0D1 207 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 KIF3CO14782 793 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 RAD21O60216 631 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 FMNL1O95466 1100 aaPredicted RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 ITGBL1O95965 494 aaPredicted RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 GOLGA8HP0CJ92 632 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 FKBP1BP68106 108 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 CCDC96Q2M329 555 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 GPATCH4Q5T3I0 446 aaKnown RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 LDLRAD1Q5T700 205 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 NBPF11Q86T75 865 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 CMTR1Q8N1G2 835 aaKnown RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 SRBD1Q8N5C6 995 aaKnown RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 PHKBQ93100 1093 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 LZTS2Q9BRK4 669 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 SLC26A6Q9BXS9 759 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 KIAA1683Q9H0B3 1180 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms