RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	MCM4	P33991	863 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TNNI2	P48788	182 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	HTRA3	P83110	453 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TCP10	Q12799	353 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	PICALM	Q13492	652 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TTC31	Q49AM3	519 aa	Predicted RBP	13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	EFCAB13	Q8IY85	973 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	SAMD3	Q8N6K7	520 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	STAP2	Q9UGK3	403 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	GPR75-ASB3	A0A0A6YYF3	556 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	DDX11L8	A8MPP1	907 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	SH3BP5	O60239	455 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	BAG3	O95817	575 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	CHGB	P05060	677 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	VDR	P11473	427 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	SLC4A3	P48751	1232 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	NFIA	Q12857	509 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	PLEKHM2	Q8IWE5	1019 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	FAM163A	Q96GL9	167 aa	Predicted RBP	13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	FSD1	Q9BTV5	496 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TMEM39B	Q9GZU3	492 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TMX1	Q9H3N1	280 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	CPSF2	Q9P2I0	782 aa	Known RBP	13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	DDX41	Q9UJV9	622 aa	Known RBP	13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	TRAK2	O60296	914 aa		13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	DYNLL1	P63167	89 aa	Known RBP	13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	SLFNL1	Q499Z3	407 aa		13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	TEX11	Q8IYF3	940 aa		13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	KBTBD3	Q8NAB2	608 aa		13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	CNTNAP1	P78357	1384 aa		13.3	□□□□□ -0.28
BRCA1-222	ENST00000493919	TMEM88B	A6NKF7	163 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	KIF5C	O60282	957 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	CDKL5	O76039	1030 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	STK10	O94804	968 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	ECEL1	O95672	775 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	NF2	P35240	595 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	PRKG1	Q13976	671 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	TTLL12	Q14166	644 aa	Predicted RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	TSGA10IP	Q3SY00	556 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	CDAN1	Q8IWY9	1227 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	RBM12B	Q8IXT5	1001 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	ABT1	Q9ULW3	272 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	PPP2R3B	Q9Y5P8	575 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	AK9	Q5TCS8	1911 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	RBM47	A0AV96	593 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	OAT	P04181	439 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	ADD2	P35612	726 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	TSNAXIP1	Q2TAA8	658 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	FILIP1L	Q4L180	1135 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	ZSCAN25	Q6NSZ9	544 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	IQCF2	Q8IXL9	164 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	KRT222	Q8N1A0	295 aa		13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	METTL14	Q9HCE5	456 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	TPX2	Q9ULW0	747 aa	Known RBP	13.29	□□□□□ -0.28
BRCA1-222	ENST00000493919	SSC5D	A1L4H1	1573 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	MYO1C	O00159	1063 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	WDHD1	O75717	1129 aa	Predicted RBP	13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	PLCG2	P16885	1265 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	U2AF2	P26368	475 aa	Known RBP eCLIP	13.28	□□□□□ -0.28	1e-6	■■■□□ 19.1
BRCA1-222	ENST00000493919	ICA1	Q05084	483 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	CST9	Q5W186	159 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	SKAP1	Q86WV1	359 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	RPUSD2	Q8IZ73	545 aa	Known RBP	13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	MICALL1	Q8N3F8	863 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	CCDC26	Q8TAB7	109 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	RILPL2	Q969X0	211 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	DDX4	Q9NQI0	724 aa	Known RBP	13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	FAM198A	Q9UFP1	575 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	FZD1	Q9UP38	647 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	RFX7	Q2KHR2	1363 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	CDK5RAP2	Q96SN8	1893 aa		13.28	□□□□□ -0.28
BRCA1-222	ENST00000493919	MAGEB6P1	A0A0J9YX57	407 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	TCRBV5S4A2T	A0A5A2	114 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	PEX14	O75381	377 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	TRPC1	P48995	793 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	FKBP1C	Q5VVH2	108 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	C16orf87	Q6PH81	154 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	FAM83A	Q86UY5	434 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	MICAL1	Q8TDZ2	1067 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	SYAP1	Q96A49	352 aa	Predicted RBP	13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	GBA2	Q9HCG7	927 aa	Predicted RBP	13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	CREBZF	Q9NS37	354 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	BLOC1S6	Q9UL45	172 aa		13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.27	□□□□□ -0.28
BRCA1-222	ENST00000493919	PAPPA2	Q9BXP8	1791 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	NCAPG2	Q86XI2	1143 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	MAPKAPK5	Q8IW41	473 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	TGFBRAP1	Q8WUH2	860 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	AGBL1	Q96MI9	1066 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	IDI2	Q9BXS1	227 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	OSBPL3	Q9H4L5	887 aa		13.27	□□□□□ -0.29
BRCA1-222	ENST00000493919	FOCAD	Q5VW36	1801 aa		13.26	□□□□□ -0.29
BRCA1-222	ENST00000493919	ANKRD62	A6NC57	917 aa		13.26	□□□□□ -0.29
BRCA1-222	ENST00000493919	CREB3	O43889	395 aa		13.26	□□□□□ -0.29
BRCA1-222	ENST00000493919	MBD4	O95243	580 aa		13.26	□□□□□ -0.29

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