RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 SYNPO2Q9UMS6 1093 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 STX8Q9UNK0 236 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 CNTNAP5Q8WYK1 1306 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 DTNBO60941 627 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 CDKL5O76039 1030 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 GDF11O95390 407 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 PDIA4P13667 645 aaKnown RBP14.75□□□□□ -0.05
VPS52-220ENST00000493674 SYT1P21579 422 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 CAP2P40123 477 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 SEPT2Q15019 361 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 TMTC3Q6ZXV5 915 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 LDHDQ86WU2 507 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 CCDC144CPQ8IYA2 1237 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 HOOK2Q96ED9 719 aa14.75□□□□□ -0.05
VPS52-220ENST00000493674 PALM3A6NDB9 673 aaPredicted RBP14.74□□□□□ -0.05
VPS52-220ENST00000493674 CPLX1O14810 134 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 FMNL1O95466 1100 aaPredicted RBP14.74□□□□□ -0.05
VPS52-220ENST00000493674 GH2P01242 217 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 PDCP20941 246 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 CPLX2Q6PUV4 134 aaKnown RBP14.74□□□□□ -0.05
VPS52-220ENST00000493674 MIGA2Q7L4E1 593 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 NUP133Q8WUM0 1156 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 MAD2L2Q9UI95 211 aa14.74□□□□□ -0.05
VPS52-220ENST00000493674 MPHOSPH10O00566 681 aaKnown RBP14.73□□□□□ -0.05
VPS52-220ENST00000493674 STX6O43752 255 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 PLEKHA8P1O95397 391 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 PDHBP11177 359 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 EEF2P13639 858 aaKnown RBP14.73□□□□□ -0.05
VPS52-220ENST00000493674 KIF5BP33176 963 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 ICA1Q05084 483 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 SLC35G1Q2M3R5 365 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 DCAF15Q66K64 600 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 CTCFLQ8NI51 663 aaPredicted RBP14.73□□□□□ -0.05
VPS52-220ENST00000493674 RNF26Q9BY78 433 aaPredicted RBP14.73□□□□□ -0.05
VPS52-220ENST00000493674 ZNF341Q9BYN7 854 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 CABP5Q9NP86 173 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 ORC3Q9UBD5 711 aaPredicted RBP14.73□□□□□ -0.05
VPS52-220ENST00000493674 MTMR6Q9Y217 621 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 KIF3AQ9Y496 699 aa14.73□□□□□ -0.05
VPS52-220ENST00000493674 WDR33Q9C0J8 1336 aaKnown RBP14.72□□□□□ -0.05
VPS52-220ENST00000493674 CTNND1O60716 968 aaKnown RBP14.72□□□□□ -0.05
VPS52-220ENST00000493674 ASNSP08243 561 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 SMARCA1P28370 1054 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 CLEC17AQ6ZS10 378 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 RASGRP2Q7LDG7 609 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 LRRC47Q8N1G4 583 aaKnown RBP14.72□□□□□ -0.05
VPS52-220ENST00000493674 GMCL1P1Q8NEA9 526 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 PHKBQ93100 1093 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 DCPSQ96C86 337 aaKnown RBP14.72□□□□□ -0.05
VPS52-220ENST00000493674 DDX11Q96FC9 970 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 CLIP2Q9UDT6 1046 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 A0A0G2JMZ2 1700 aa14.72□□□□□ -0.05
VPS52-220ENST00000493674 PRPF3O43395 683 aaKnown RBP14.71□□□□□ -0.05
VPS52-220ENST00000493674 ZSCAN22P10073 491 aaPredicted RBP14.71□□□□□ -0.05
VPS52-220ENST00000493674 GNAQP50148 359 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 SUPT20HL1Q3ZLR7 823 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 ASPRV1Q53RT3 343 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 LARP1BQ659C4 914 aaKnown RBP14.71□□□□□ -0.05
VPS52-220ENST00000493674 CHADLQ6NUI6 762 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 SULF1Q8IWU6 871 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 STAG2Q8N3U4 1231 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 SRBD1Q8N5C6 995 aaKnown RBP14.71□□□□□ -0.05
VPS52-220ENST00000493674 TNPO1Q92973 898 aaKnown RBP14.71□□□□□ -0.05
VPS52-220ENST00000493674 LZTS2Q9BRK4 669 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 SPZ1Q9BXG8 430 aa14.71□□□□□ -0.05
VPS52-220ENST00000493674 A0A1W2PRG0 241 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 USP17L5A8MUK1 530 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 ADM5C9JUS6 153 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 DEXIO95424 95 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 PARP1P09874 1014 aaKnown RBP14.7□□□□□ -0.06
VPS52-220ENST00000493674 SSRP1Q08945 709 aaKnown RBP14.7□□□□□ -0.06
VPS52-220ENST00000493674 ZNF543Q08ER8 600 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 PKN1Q16512 942 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 NOL9Q5SY16 702 aaKnown RBP14.7□□□□□ -0.06
VPS52-220ENST00000493674 KRT26Q7Z3Y9 468 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 FAM184AQ8NB25 1140 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 DCAF4Q8WV16 495 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 KLRG1Q96E93 195 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 TMX2Q9Y320 296 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 MYH7BA7E2Y1 1941 aa14.7□□□□□ -0.06
VPS52-220ENST00000493674 CYTH3O43739 400 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 INPP5BP32019 993 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 EAPPQ56P03 285 aaPredicted RBP14.69□□□□□ -0.06
VPS52-220ENST00000493674 PRAMEF18Q5VWM3 479 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 CDC37L1Q7L3B6 337 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 TRIM22Q8IYM9 498 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 CMTR1Q8N1G2 835 aaKnown RBP14.69□□□□□ -0.06
VPS52-220ENST00000493674 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.69□□□□□ -0.06
VPS52-220ENST00000493674 GMCL1Q96IK5 515 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 SLC26A6Q9BXS9 759 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 ARHGEF10LQ9HCE6 1279 aa14.69□□□□□ -0.06
VPS52-220ENST00000493674 RBM27Q9P2N5 1060 aaKnown RBP14.69□□□□□ -0.06
VPS52-220ENST00000493674 UBE2Q2LH0YL09 131 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 PPFIA3O75145 1194 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 USP2O75604 605 aaPredicted RBP14.68□□□□□ -0.06
VPS52-220ENST00000493674 F13A1P00488 732 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 HSPA6P17066 643 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 GPATCH4Q5T3I0 446 aaKnown RBP14.68□□□□□ -0.06
VPS52-220ENST00000493674 USP17L2Q6R6M4 530 aa14.68□□□□□ -0.06
VPS52-220ENST00000493674 SCYL3Q8IZE3 742 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms