RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PLCD1P51178 756 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 TRIM32Q13049 653 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 DPP9Q86TI2 863 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 MIER1Q8N108 512 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 GPATCH3Q96I76 525 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 PRO3102Q9H379 93 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 PAG1Q9NWQ8 432 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 NDUFB9Q9Y6M9 179 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 RANBP2P49792 3224 aaKnown RBP13.94□□□□□ -0.18
COL6A3-213ENST00000493475 SEPT2Q15019 361 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 Q3C1V9 767 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 GPR153Q6NV75 609 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 USP6NLQ92738 828 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 ZMYND8Q9ULU4 1186 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-213ENST00000493475 SIPA1L1O43166 1804 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 MYH1P12882 1939 aa13.94□□□□□ -0.18
COL6A3-213ENST00000493475 SPDYE16A6NNV3 312 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 HOXC6P09630 235 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 ICA1Q05084 483 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 SHROOM1Q2M3G4 852 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 LRRFIP1Q32MZ4 808 aaKnown RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 ARRDC4Q8NCT1 418 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 SHCBP1Q8NEM2 672 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 ACER1Q8TDN7 264 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 LBHD1Q9BQE6 289 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 UBE2OQ9C0C9 1292 aaKnown RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 MROH8Q9H579 483 aa13.93□□□□□ -0.18
COL6A3-213ENST00000493475 DCP1AQ9NPI6 582 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 DDX20Q9UHI6 824 aaKnown RBP13.93□□□□□ -0.18
COL6A3-213ENST00000493475 FLOT1O75955 427 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 ATP5JP18859 108 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 CCND3P30281 292 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-213ENST00000493475 COPB2P35606 906 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 GABPAQ06546 454 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 GRB14Q14449 540 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 PLS1Q14651 629 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 CCL14Q16627 93 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 TDHQ8IZJ6 230 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 SDR42E1Q8WUS8 393 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 GDF15Q99988 308 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 LRRCC1Q9C099 1032 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 ZNF287Q9HBT7 754 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 GOPCQ9HD26 462 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 COG6Q9Y2V7 657 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 CDK5RAP2Q96SN8 1893 aa13.92□□□□□ -0.18
COL6A3-213ENST00000493475 KBTBD13C9JR72 458 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 DNM1LO00429 736 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 WDR46O15213 610 aaKnown RBP13.91□□□□□ -0.18
COL6A3-213ENST00000493475 MBD4O95243 580 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 SLC25A27O95847 323 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 UBE3CQ15386 1083 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 OLFML2BQ68BL8 750 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 ABRAQ8N0Z2 381 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 LCORLQ8N3X6 602 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 SPATC1LQ9H0A9 340 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 BOLA2Q9H3K6 86 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 ARMT1Q9H993 441 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 PLSCR2Q9NRY7 297 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 ZBTB40Q9NUA8 1239 aa13.91□□□□□ -0.18
COL6A3-213ENST00000493475 ARPP21Q9UBL0 812 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-213ENST00000493475 DOCK3Q8IZD9 2030 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 PEX10O60683 326 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 CNMDO75829 334 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 COL6A1P12109 1028 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 FCER1AP12319 257 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 SYN1P17600 705 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 ADORA2AP29274 412 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 ADD2P35612 726 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 NCAPG2Q86XI2 1143 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 HAUS7Q99871 368 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 SENP6Q9GZR1 1112 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-213ENST00000493475 VCPKMTQ9H867 229 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 KANSL2Q9H9L4 492 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 BTBD7Q9P203 1132 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 RCAN3Q9UKA8 241 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 TMX2Q9Y320 296 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 SLC4A4Q9Y6R1 1079 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 NAV1Q8NEY1 1877 aa13.9□□□□□ -0.18
COL6A3-213ENST00000493475 TCRBV5S4A2TA0A5A2 114 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 RAD21O60216 631 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 ERCC3P19447 782 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 MAGEA10P43363 369 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-213ENST00000493475 LRIT3Q3SXY7 679 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 PHF12Q96QT6 1004 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 MOV10L1Q9BXT6 1211 aaKnown RBP13.89□□□□□ -0.19
COL6A3-213ENST00000493475 CTDP1Q9Y5B0 961 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-213ENST00000493475 DDX60LQ5H9U9 1706 aaKnown RBP13.89□□□□□ -0.19
COL6A3-213ENST00000493475 PFASO15067 1338 aa13.89□□□□□ -0.19
COL6A3-213ENST00000493475 CYP2C19P33261 490 aa13.88□□□□□ -0.19
COL6A3-213ENST00000493475 GUCY1A2P33402 732 aa13.88□□□□□ -0.19
COL6A3-213ENST00000493475 CDK8P49336 464 aa13.88□□□□□ -0.19
COL6A3-213ENST00000493475 MNX1P50219 401 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-213ENST00000493475 KCTD2Q14681 263 aa13.88□□□□□ -0.19
COL6A3-213ENST00000493475 C12orf60Q5U649 245 aa13.88□□□□□ -0.19
COL6A3-213ENST00000493475 MYO5AQ9Y4I1 1855 aaKnown RBP13.87□□□□□ -0.19
COL6A3-213ENST00000493475 A0A1W2PRG0 241 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 USP17L12C9JPN9 530 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 USP17L21D6R901 530 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 SEPT4O43236 478 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 ZFYP08048 801 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms