RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 PPP1R9BQ96SB3 815 aa11.08□□□□□ -0.64
BRCA1-219ENST00000491747 SLC45A1Q9Y2W3 748 aa11.08□□□□□ -0.64
BRCA1-219ENST00000491747 HIP1O00291 1037 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 SP3Q02447 781 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 USP17L2Q6R6M4 530 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 TNS4Q8IZW8 715 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 NBPF3Q9H094 633 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 KIAA1683Q9H0B3 1180 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 MKNK2Q9HBH9 465 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 RLFQ13129 1914 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 PARP14Q460N5 1801 aa11.07□□□□□ -0.64
BRCA1-219ENST00000491747 CTGFP29279 349 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 CASC1Q6TDU7 716 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 NKX2-3Q8TAU0 364 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 ARHGAP39Q9C0H5 1083 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 TMOD4Q9NZQ9 345 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 ANAPC4Q9UJX5 808 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 PEX10O60683 326 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 ECM2O94769 699 aaPredicted RBP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 EEF2P13639 858 aaKnown RBP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 FAM47AQ5JRC9 791 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 POTEEQ6S8J3 1075 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 C12orf42Q96LP6 360 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 PARK7Q99497 189 aaKnown RBP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 FEZ1Q99689 392 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 MCOLN1Q9GZU1 580 aa11.06□□□□□ -0.64
BRCA1-219ENST00000491747 ASCC2Q9H1I8 757 aaPredicted RBP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 CWC22Q9HCG8 908 aaKnown RBP11.06□□□□□ -0.64
BRCA1-219ENST00000491747 ZMYM6O95789 1325 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 IGKV6D-41A0A0C4DH26 115 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 TPM2P07951 284 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 BCRP11274 1271 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 HOXA7P31268 230 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-219ENST00000491747 HAND2P61296 217 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 ICA1Q05084 483 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 CTU1Q7Z7A3 348 aaKnown RBP11.05□□□□□ -0.64
BRCA1-219ENST00000491747 ST18O60284 1047 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 ZNF445P59923 1031 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 ZSCAN30Q86W11 494 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 ZNF444Q8N0Y2 327 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-219ENST00000491747 P2RX7Q99572 595 aaKnown RBP11.05□□□□□ -0.64
BRCA1-219ENST00000491747 TMX2Q9Y320 296 aa11.05□□□□□ -0.64
BRCA1-219ENST00000491747 FGRP09769 529 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 VCAM1P19320 739 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 PTH1RQ03431 593 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 PDE4BQ07343 736 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 KANSL2Q9H9L4 492 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 OSBPP22059 807 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 MSNP26038 577 aaKnown RBP11.04□□□□□ -0.64
BRCA1-219ENST00000491747 USP14P54578 494 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 LACTBP83111 547 aaPredicted RBP11.04□□□□□ -0.64
BRCA1-219ENST00000491747 TFAP4Q01664 338 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 ATP2B2Q01814 1243 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 OTOP1Q7RTM1 612 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 TBC1D10CQ8IV04 446 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 ANKRD13CQ8N6S4 541 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 ERO1AQ96HE7 468 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 DSCC1Q9BVC3 393 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 USP26Q9BXU7 913 aa11.04□□□□□ -0.64
BRCA1-219ENST00000491747 SGSM2O43147 1006 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 NMT2O60551 498 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 SLC3A2P08195 630 aaKnown RBP11.03□□□□□ -0.64
BRCA1-219ENST00000491747 PABPC4Q13310 644 aaKnown RBP eCLIP11.03□□□□□ -0.64
BRCA1-219ENST00000491747 MCTP1Q6DN14 999 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 CATSPERGQ6ZRH7 1159 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 SPICE1Q8N0Z3 855 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 NEDD1Q8NHV4 660 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 SMCR8Q8TEV9 937 aaPredicted RBP11.03□□□□□ -0.64
BRCA1-219ENST00000491747 CEP95Q96GE4 821 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 RPAP3Q9H6T3 665 aaPredicted RBP11.03□□□□□ -0.64
BRCA1-219ENST00000491747 ARHGEF10LQ9HCE6 1279 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 IL17RBQ9NRM6 502 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 PNMA3Q9UL41 463 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 TRIM17Q9Y577 477 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 PLIN4Q96Q06 1357 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 COL11A1P12107 1806 aaPredicted RBP11.03□□□□□ -0.64
BRCA1-219ENST00000491747 DOCK3Q8IZD9 2030 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 REC8O95072 547 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 VCPKMTQ9H867 229 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 ZNF287Q9HBT7 754 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 TXNRD2Q9NNW7 524 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 MTMR4Q9NYA4 1195 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 NYAP2Q9P242 653 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 CLIP2Q9UDT6 1046 aa11.03□□□□□ -0.64
BRCA1-219ENST00000491747 RAD50Q92878 1312 aa11.02□□□□□ -0.64
BRCA1-219ENST00000491747 A0A0G2JMZ2 1700 aa11.02□□□□□ -0.64
BRCA1-219ENST00000491747 PLXNB2O15031 1838 aa11.02□□□□□ -0.64
BRCA1-219ENST00000491747 USP17L15C9J2P7 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L13C9JLJ4 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L11C9JVI0 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L18D6R9N7 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L22D6RA61 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L17D6RBQ6 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L19D6RCP7 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 USP17L20D6RJB6 530 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 ORC4O43929 436 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 TSPY3P0CV98 308 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 TSPY8P0CW00 308 aa11.02□□□□□ -0.65
BRCA1-219ENST00000491747 HERVK_113P62684 666 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms