RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 CALM2P0DP24 149 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CALM3P0DP25 149 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 ATP2B1P20020 1258 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 NOM1Q5C9Z4 860 aaKnown RBP16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CCDC84Q86UT8 332 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-219ENST00000491128 HOMER1Q86YM7 354 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 FZD1Q9UP38 647 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 NID2Q14112 1375 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 GPCPD1Q9NPB8 672 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 RBM28Q9NW13 759 aaKnown RBP16.12■□□□□ 0.17
SMPD4-219ENST00000491128 SWAP70Q9UH65 585 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 FER1L6Q2WGJ9 1857 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 FAM205CA6NFA0 338 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 ANKS1AQ92625 1134 aa16.12■□□□□ 0.17
SMPD4-219ENST00000491128 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.12■□□□□ 0.17
SMPD4-219ENST00000491128 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 KLRF2D3W0D1 207 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 GH2P01242 217 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 SKOR2Q2VWA4 1001 aaPredicted RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 DLK2Q6UY11 383 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 DIS3L2Q8IYB7 885 aaKnown RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 RNF26Q9BY78 433 aaPredicted RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 ENTPD3O75355 529 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 TOP1P11387 765 aaKnown RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 EEF2P13639 858 aaKnown RBP16.11■□□□□ 0.17
SMPD4-219ENST00000491128 GRM4Q14833 912 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 KCTD1Q719H9 257 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 PGBD1Q96JS3 809 aa16.11■□□□□ 0.17
SMPD4-219ENST00000491128 STK36Q9NRP7 1315 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 PRPF3O43395 683 aaKnown RBP16.1■□□□□ 0.17
SMPD4-219ENST00000491128 MYO1BO43795 1136 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 TTLL1O95922 423 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 KIF5BP33176 963 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 SLC16A2P36021 539 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 RCAN1P53805 252 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 EARS2Q5JPH6 523 aaKnown RBP16.1■□□□□ 0.17
SMPD4-219ENST00000491128 TTBK2Q6IQ55 1244 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 EHD4Q9H223 541 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 IGKV6D-41A0A0C4DH26 115 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 MMP1P03956 469 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 RASA3Q14644 834 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 MYSM1Q5VVJ2 828 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 SIAH1Q8IUQ4 282 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 FAM151AQ8WW52 585 aa16.1■□□□□ 0.17
SMPD4-219ENST00000491128 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.1■□□□□ 0.17
SMPD4-219ENST00000491128 DDNO94850 711 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 PARP1P09874 1014 aaKnown RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 PDHBP11177 359 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 EPS15P42566 896 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 ABCB5Q2M3G0 1257 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 TYW1BQ6NUM6 668 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 GAS2L3Q86XJ1 694 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 FOXP4Q8IVH2 680 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 TRPM4Q8TD43 1214 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 NUP88Q99567 741 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 LTBP3Q9NS15 1303 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 FOCADQ5VW36 1801 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 PALM3A6NDB9 673 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 PDIA4P13667 645 aaKnown RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 LIG1P18858 919 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 TATDN1Q6P1N9 297 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 SPICE1Q8N0Z3 855 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 TMEM87AQ8NBN3 555 aa16.09■□□□□ 0.17
SMPD4-219ENST00000491128 ZBED3Q96IU2 234 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-219ENST00000491128 MARCKSP29966 332 aaPredicted RBP16.08■□□□□ 0.17
SMPD4-219ENST00000491128 UBE2HP62256 183 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 ZSCAN23Q3MJ62 389 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 RASGRP4Q8TDF6 673 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 WASF1Q92558 559 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 RNF181Q9P0P0 153 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 HACL1Q9UJ83 578 aa16.08■□□□□ 0.17
SMPD4-219ENST00000491128 SYCE3A1L190 88 aa16.08■□□□□ 0.16
SMPD4-219ENST00000491128 LMNB1P20700 586 aa16.08■□□□□ 0.16
SMPD4-219ENST00000491128 PPP2R5BQ15173 497 aa16.08■□□□□ 0.16
SMPD4-219ENST00000491128 ZYXQ15942 572 aaKnown RBP16.08■□□□□ 0.16
SMPD4-219ENST00000491128 CCDC178Q5BJE1 867 aa16.08■□□□□ 0.16
SMPD4-219ENST00000491128 HEATR3Q7Z4Q2 680 aa16.08■□□□□ 0.16
SMPD4-219ENST00000491128 SCAND2PQ9GZW5 306 aaPredicted RBP16.08■□□□□ 0.16
SMPD4-219ENST00000491128 GOLGA6L4A6NEF3 574 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 SCG2P13521 617 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 PTMSP20962 102 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 ECE1P42892 770 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 SNAP25P60880 206 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 ICA1Q05084 483 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 CCDC96Q2M329 555 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 KIF4BQ2VIQ3 1234 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 PIGSQ96S52 555 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 CABP5Q9NP86 173 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 CFAP45Q9UL16 551 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 A0A1W2PRG0 241 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 ME1P48163 572 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 ZNF280AP59817 542 aaPredicted RBP16.07■□□□□ 0.16
SMPD4-219ENST00000491128 CAMK4Q16566 473 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 MRVI1Q9Y6F6 885 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 ATRNL1Q5VV63 1379 aa16.07■□□□□ 0.16
SMPD4-219ENST00000491128 SIPA1L1O43166 1804 aa16.06■□□□□ 0.16
SMPD4-219ENST00000491128 ECM29Q5VYK3 1845 aa16.06■□□□□ 0.16
SMPD4-219ENST00000491128 WNT7AO00755 349 aa16.06■□□□□ 0.16
SMPD4-219ENST00000491128 SF3A1Q15459 793 aaKnown RBP16.06■□□□□ 0.16
SMPD4-219ENST00000491128 SAMD1Q6SPF0 538 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms