RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 BRMS1Q9HCU9 246 aa5.64□□□□□ -1.51
CPSF3-205ENST00000489629 DUSP13Q9UII6 198 aa5.64□□□□□ -1.51
CPSF3-205ENST00000489629 SHISA3A0PJX4 238 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 RGS13O14921 159 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 ATE1O95260 518 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 KRT1P04264 644 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 ZGLP1P0C6A0 271 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 HK2P52789 917 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 EGR3Q06889 387 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 PKN1Q16512 942 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 CWF19L2Q2TBE0 894 aaKnown RBP5.63□□□□□ -1.51
CPSF3-205ENST00000489629 LDLRAD1Q5T700 205 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 ZNF296Q8WUU4 475 aaPredicted RBP5.63□□□□□ -1.51
CPSF3-205ENST00000489629 ADAMTS1Q9UHI8 967 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 ZNF281Q9Y2X9 895 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 SUPT16HQ9Y5B9 1047 aaKnown RBP5.63□□□□□ -1.51
CPSF3-205ENST00000489629 PCDHA11Q9Y5I1 949 aa5.63□□□□□ -1.51
CPSF3-205ENST00000489629 UBOX5O94941 541 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 RAC2P15153 192 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 CRKP46108 304 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 TNNI2P48788 182 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 TEKQ02763 1124 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 ZNF326Q5BKZ1 582 aaKnown RBP5.62□□□□□ -1.51
CPSF3-205ENST00000489629 ARSHQ5FYA8 562 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 MPZL3Q6UWV2 235 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 PHACTR4Q8IZ21 702 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 GIPC2Q8TF65 315 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 MYLIPQ8WY64 445 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 EHMT1Q9H9B1 1298 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 PCDHB14Q9Y5E9 798 aa5.62□□□□□ -1.51
CPSF3-205ENST00000489629 TSPAN15O95858 294 aa5.61□□□□□ -1.51
CPSF3-205ENST00000489629 CDCP2Q5VXM1 449 aa5.61□□□□□ -1.51
CPSF3-205ENST00000489629 SYDE1Q6ZW31 735 aaPredicted RBP5.61□□□□□ -1.51
CPSF3-205ENST00000489629 PDZD8Q8NEN9 1154 aa5.61□□□□□ -1.51
CPSF3-205ENST00000489629 EBF1Q9UH73 591 aa5.61□□□□□ -1.51
CPSF3-205ENST00000489629 GGT7Q9UJ14 662 aa5.61□□□□□ -1.51
CPSF3-205ENST00000489629 LTKP29376 864 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 GBP1P32455 592 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 TRHRP34981 398 aaPredicted RBP5.6□□□□□ -1.51
CPSF3-205ENST00000489629 NR0B2Q15466 257 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 HS2ST1Q7LGA3 356 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 FBXO15Q8NCQ5 510 aaPredicted RBP5.6□□□□□ -1.51
CPSF3-205ENST00000489629 DIRC2Q96SL1 478 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 PPP1R16BQ96T49 567 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 HDAC8Q9BY41 377 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 NSUN3Q9H649 340 aaKnown RBP5.6□□□□□ -1.51
CPSF3-205ENST00000489629 CNNM2Q9H8M5 875 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 KCNK12Q9HB15 430 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 GMIPQ9P107 970 aa5.6□□□□□ -1.51
CPSF3-205ENST00000489629 RAP1GAPP47736 663 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 CLCQ05315 142 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 MLECQ14165 292 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 TIGD5Q53EQ6 642 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 NBPF12Q5TAG4 269 aaPredicted RBP5.59□□□□□ -1.51
CPSF3-205ENST00000489629 OVOS1Q6IE37 1185 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 SPOCD1Q6ZMY3 1216 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 C1QL4Q86Z23 238 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 LILRA2Q8N149 483 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 ENOX1Q8TC92 643 aaKnown RBP5.59□□□□□ -1.51
CPSF3-205ENST00000489629 ATG4CQ96DT6 458 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 G6PC3Q9BUM1 346 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 RNF32Q9H0A6 362 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.59□□□□□ -1.51
CPSF3-205ENST00000489629 UBP1Q9NZI7 540 aa5.59□□□□□ -1.51
CPSF3-205ENST00000489629 FITM1A5D6W6 292 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 C1QTNF9P0C862 333 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 RAG1P15918 1043 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 CFPP27918 469 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 POLR2BP30876 1174 aaKnown RBP5.58□□□□□ -1.52
CPSF3-205ENST00000489629 RNF4P78317 190 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 NMIQ13287 307 aaPredicted RBP5.58□□□□□ -1.52
CPSF3-205ENST00000489629 NBPF9Q3BBW0 867 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 SLITRK4Q8IW52 837 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 REXO1Q8N1G1 1221 aaKnown RBP5.58□□□□□ -1.52
CPSF3-205ENST00000489629 USHBP1Q8N6Y0 703 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 SYTL5Q8TDW5 730 aaPredicted RBP5.58□□□□□ -1.52
CPSF3-205ENST00000489629 LINC01599Q8WXQ3 324 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 DHX38Q92620 1227 aaKnown RBP5.58□□□□□ -1.52
CPSF3-205ENST00000489629 NT5C1AQ9BXI3 368 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 C19orf44Q9H6X5 657 aa5.58□□□□□ -1.52
CPSF3-205ENST00000489629 MEIS3P2A8K0S8 358 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 ZNF16P17020 682 aaPredicted RBP5.57□□□□□ -1.52
CPSF3-205ENST00000489629 CLEC16AQ2KHT3 1053 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 SEZ6Q53EL9 994 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 FBLN7Q53RD9 439 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 RNF111Q6ZNA4 994 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 NLRC3Q7RTR2 1065 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 OXR1Q8N573 874 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 DAGLBQ8NCG7 672 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 SHISA4Q96DD7 197 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 EAF1Q96JC9 268 aaPredicted RBP5.57□□□□□ -1.52
CPSF3-205ENST00000489629 EPB41L4BQ9H329 900 aa5.57□□□□□ -1.52
CPSF3-205ENST00000489629 DCP1AQ9NPI6 582 aaPredicted RBP5.57□□□□□ -1.52
CPSF3-205ENST00000489629 NOTOA8MTQ0 251 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 MED14OSP0DP75 135 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 CCNFP41002 786 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 SNW1Q13573 536 aaKnown RBP5.56□□□□□ -1.52
CPSF3-205ENST00000489629 GK5Q6ZS86 529 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms