RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 VCPKMTQ9H867 229 aa10.86□□□□□ -0.67
HDAC6-232ENST00000489053 HELLSQ9NRZ9 838 aa10.86□□□□□ -0.67
HDAC6-232ENST00000489053 TOMM22Q9NS69 142 aa10.86□□□□□ -0.67
HDAC6-232ENST00000489053 DIAPH3Q9NSV4 1193 aa10.86□□□□□ -0.67
HDAC6-232ENST00000489053 HIP1O00291 1037 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 WDR46O15213 610 aaKnown RBP10.85□□□□□ -0.67
HDAC6-232ENST00000489053 PRDM1O75626 825 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 EN2P19622 333 aaPredicted RBP10.85□□□□□ -0.67
HDAC6-232ENST00000489053 CYP2B6P20813 491 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 GUCY1A2P33402 732 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 RGS2P41220 211 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 NUCB1Q02818 461 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 TICAM2Q86XR7 235 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 CLEC10AQ8IUN9 316 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 SMC5Q8IY18 1101 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 MB21D1Q8N884 522 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 SEC62Q99442 399 aaKnown RBP10.85□□□□□ -0.67
HDAC6-232ENST00000489053 RBPJLQ9UBG7 517 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 TMX2Q9Y320 296 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 ATAD5Q96QE3 1844 aa10.85□□□□□ -0.67
HDAC6-232ENST00000489053 SIPA1L1O43166 1804 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 A0A1W2PRG0 241 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 TFRCP02786 760 aaKnown RBP10.84□□□□□ -0.67
HDAC6-232ENST00000489053 PPARAQ07869 468 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 IKQ13123 557 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-232ENST00000489053 MTFR1Q15390 333 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 MCMDC2Q4G0Z9 681 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 CCDC129Q6ZRS4 1044 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 GPR142Q7Z601 462 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 EPB41L4AQ9HCS5 686 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-232ENST00000489053 TXNRD2Q9NNW7 524 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 SLC5A4Q9NY91 659 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 LOC285556D6RIA3 1793 aa10.84□□□□□ -0.67
HDAC6-232ENST00000489053 TNRC18O15417 2968 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-232ENST00000489053 CDK5RAP2Q96SN8 1893 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 PDE4DIPQ5VU43 2346 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 ROBO3Q96MS0 1386 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 TSPY2A6NKD2 308 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 SPDYE16A6NNV3 312 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-232ENST00000489053 TTLL1O95922 423 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 IGHDP01880 384 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 GJB1P08034 283 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 RASA1P20936 1047 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 MFSD14CQ5VZR4 134 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 DPP9Q86TI2 863 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 NCAPG2Q86XI2 1143 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 DEFB118Q96PH6 123 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 APBA2Q99767 749 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 UNC93B1Q9H1C4 597 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 HMX1Q9NP08 348 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-232ENST00000489053 CLIP2Q9UDT6 1046 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 SALL3Q9BXA9 1300 aa10.83□□□□□ -0.68
HDAC6-232ENST00000489053 KIAA0100Q14667 2235 aaKnown RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 PHIPQ8WWQ0 1821 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 DDX60LQ5H9U9 1706 aaKnown RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 SLC15A5A6NIM6 579 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 RANBP6O60518 1105 aaKnown RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 PEX10O60683 326 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 CAPN2P17655 700 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 DSG3P32926 999 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 TFAP4Q01664 338 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 NMIQ13287 307 aaPredicted RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 FAM83BQ5T0W9 1011 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 PRPF38BQ5VTL8 546 aaKnown RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 LBX2Q6XYB7 198 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 U2AF1L4Q8WU68 220 aaKnown RBP10.82□□□□□ -0.68
HDAC6-232ENST00000489053 HTATIP2Q9BUP3 242 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 SPATC1LQ9H0A9 340 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 PORCNQ9H237 461 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 MROH8Q9H579 483 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 NYAP2Q9P242 653 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 STX8Q9UNK0 236 aa10.82□□□□□ -0.68
HDAC6-232ENST00000489053 A0A0D9SFI3 127 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 SMIM22K7EJ46 135 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 ZBED4O75132 1171 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 FARP2O94887 1054 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-232ENST00000489053 XRCC5P13010 732 aaKnown RBP10.81□□□□□ -0.68
HDAC6-232ENST00000489053 PRKAR2AP13861 404 aaKnown RBP10.81□□□□□ -0.68
HDAC6-232ENST00000489053 COPB2P35606 906 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 GJA8P48165 433 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 SLC4A3P48751 1232 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 CTDSPL2Q05D32 466 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 MAP2K5Q13163 448 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 Q3C1V9 767 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 FAM47AQ5JRC9 791 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 RRP12Q5JTH9 1297 aaKnown RBP10.81□□□□□ -0.68
HDAC6-232ENST00000489053 PLEKHM2Q8IWE5 1019 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 DPF3Q92784 378 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 ATG4CQ96DT6 458 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 FAM227BQ96M60 508 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 SLF1Q9BQI6 1058 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.81□□□□□ -0.68
HDAC6-232ENST00000489053 PTPRFP10586 1907 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 CCDC171Q6TFL3 1326 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 RPTORQ8N122 1335 aa10.81□□□□□ -0.68
HDAC6-232ENST00000489053 MYH7P12883 1935 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 F5H6K3 240 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 STRNO43815 780 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 SLC25A27O95847 323 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 FCER1AP12319 257 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms