RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ATP11BQ9Y2G3 1177 aa18.75■□□□□ 0.59
MCF2L-228ENST00000487354 NOP58Q9Y2X3 529 aaKnown RBP18.75■□□□□ 0.59
MCF2L-228ENST00000487354 TTC28Q96AY4 2481 aa18.75■□□□□ 0.59
MCF2L-228ENST00000487354 IDH1O75874 414 aaKnown RBP18.74■□□□□ 0.59
MCF2L-228ENST00000487354 ADORA2AP29274 412 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 USP5P45974 858 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 ATP8B2P98198 1209 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 SEPT2Q15019 361 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 TRIM60Q495X7 471 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 ANO1Q5XXA6 986 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 SH3RF1Q7Z6J0 888 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 CCDC8Q9H0W5 538 aaPredicted RBP18.74■□□□□ 0.59
MCF2L-228ENST00000487354 SEMA6BQ9H3T3 888 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 C1orf115Q9H7X2 142 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 IVNS1ABPQ9Y6Y0 642 aa18.74■□□□□ 0.59
MCF2L-228ENST00000487354 TRIM43BA6NCK2 446 aa18.73■□□□□ 0.59
MCF2L-228ENST00000487354 SURF6O75683 361 aaKnown RBP18.73■□□□□ 0.59
MCF2L-228ENST00000487354 BADQ92934 168 aa18.73■□□□□ 0.59
MCF2L-228ENST00000487354 TRIM43Q96BQ3 446 aaPredicted RBP18.73■□□□□ 0.59
MCF2L-228ENST00000487354 IPO8O15397 1037 aaKnown RBP18.72■□□□□ 0.59
MCF2L-228ENST00000487354 SEPT4O43236 478 aa18.72■□□□□ 0.59
MCF2L-228ENST00000487354 ITGB8P26012 769 aa18.72■□□□□ 0.59
MCF2L-228ENST00000487354 FRAT1Q92837 279 aaPredicted RBP18.72■□□□□ 0.59
MCF2L-228ENST00000487354 SPATC1LQ9H0A9 340 aa18.72■□□□□ 0.59
MCF2L-228ENST00000487354 ERCC3P19447 782 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 OS9Q13438 667 aaPredicted RBP18.71■□□□□ 0.59
MCF2L-228ENST00000487354 PRAMEF19Q5SWL8 479 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 C1orf53Q5VUE5 145 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 TTC6Q86TZ1 520 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 CERS3Q8IU89 383 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 SHCBP1Q8NEM2 672 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 MAFAQ8NHW3 353 aaPredicted RBP18.71■□□□□ 0.59
MCF2L-228ENST00000487354 MYLIPQ8WY64 445 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 PRKAG2Q9UGJ0 569 aa18.71■□□□□ 0.59
MCF2L-228ENST00000487354 EPHB4P54760 987 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 SMAD3P84022 425 aaKnown RBP18.7■□□□□ 0.58
MCF2L-228ENST00000487354 COG2Q14746 738 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 LRRC41Q15345 812 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 FAM47AQ5JRC9 791 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 DPP9Q86TI2 863 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 SIAH1Q8IUQ4 282 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 ARRDC4Q8NCT1 418 aa18.7■□□□□ 0.58
MCF2L-228ENST00000487354 PRDM5Q9NQX1 630 aaPredicted RBP18.7■□□□□ 0.58
MCF2L-228ENST00000487354 GREB1LQ9C091 1923 aaPredicted RBP18.7■□□□□ 0.58
MCF2L-228ENST00000487354 KBTBD13C9JR72 458 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 STRNO43815 780 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 ADCYAP1R1P41586 468 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 CLEC10AQ8IUN9 316 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 SLC44A5Q8NCS7 719 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 CABP5Q9NP86 173 aa18.69■□□□□ 0.58
MCF2L-228ENST00000487354 MYH7P12883 1935 aa18.68■□□□□ 0.58
MCF2L-228ENST00000487354 ROBO3Q96MS0 1386 aa18.68■□□□□ 0.58
MCF2L-228ENST00000487354 FERMT2Q96AC1 680 aa18.68■□□□□ 0.58
MCF2L-228ENST00000487354 MAML3Q96JK9 1138 aa18.68■□□□□ 0.58
MCF2L-228ENST00000487354 CYP2D6P10635 497 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 RLBP1P12271 317 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 DSG3P32926 999 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 MAP3K12Q12852 859 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 TMED8Q6PL24 325 aaPredicted RBP18.67■□□□□ 0.58
MCF2L-228ENST00000487354 ABRAQ8N0Z2 381 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 ATG4CQ96DT6 458 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 TANGO6Q9C0B7 1094 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 HOXC10Q9NYD6 342 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 PHF24Q9UPV7 400 aa18.67■□□□□ 0.58
MCF2L-228ENST00000487354 TCRBV5S4A2TA0A5A2 114 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 SMIM22K7EJ46 135 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 PDE6AP16499 860 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 TLE2Q04725 743 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 ZKSCAN2Q63HK3 967 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 CHD9Q3L8U1 2897 aa18.66■□□□□ 0.58
MCF2L-228ENST00000487354 MAGEB6P1A0A0J9YX57 407 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 POLR3DP05423 398 aaPredicted RBP18.65■□□□□ 0.58
MCF2L-228ENST00000487354 TMEM132BQ14DG7 1078 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 LCORLQ8N3X6 602 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 MB21D1Q8N884 522 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 SDR42E1Q8WUS8 393 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 MROH8Q9H579 483 aa18.65■□□□□ 0.58
MCF2L-228ENST00000487354 DCP1AQ9NPI6 582 aaPredicted RBP18.65■□□□□ 0.58
MCF2L-228ENST00000487354 MCM3APO60318 1980 aa18.64■□□□□ 0.58
MCF2L-228ENST00000487354 MPHOSPH10O00566 681 aaKnown RBP18.64■□□□□ 0.57
MCF2L-228ENST00000487354 MYCNP04198 464 aaPredicted RBP18.64■□□□□ 0.57
MCF2L-228ENST00000487354 TAL1P17542 331 aaPredicted RBP18.64■□□□□ 0.57
MCF2L-228ENST00000487354 CEP85Q6P2H3 762 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 NCAPG2Q86XI2 1143 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 USP38Q8NB14 1042 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 LENG1Q96BZ8 264 aaPredicted RBP18.64■□□□□ 0.57
MCF2L-228ENST00000487354 DYNLL2Q96FJ2 89 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 MCM9Q9NXL9 1143 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 ADAMTS5Q9UNA0 930 aa18.64■□□□□ 0.57
MCF2L-228ENST00000487354 GBF1Q92538 1859 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 KIAA0355O15063 1070 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 FLOT1O75955 427 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 AKR1B1P15121 316 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 FOSL2P15408 326 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 TMEM179Q6ZVK1 233 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 AACSQ86V21 672 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 SPICE1Q8N0Z3 855 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 PRDM6Q9NQX0 595 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 EXOC6BQ9Y2D4 811 aa18.63■□□□□ 0.57
MCF2L-228ENST00000487354 TMX2Q9Y320 296 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms