RNA–Protein interactions for RNA: ENST00000486254.3

PKP4-213, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-213ENST00000486254 SDF4Q9BRK5 362 aa13.74□□□□□ -0.21
PKP4-213ENST00000486254 CBX8Q9HC52 389 aa13.74□□□□□ -0.21
PKP4-213ENST00000486254 VPS54Q9P1Q0 977 aa13.74□□□□□ -0.21
PKP4-213ENST00000486254 MAD2L2Q9UI95 211 aa13.74□□□□□ -0.21
PKP4-213ENST00000486254 FBXO2Q9UK22 296 aaPredicted RBP13.74□□□□□ -0.21
PKP4-213ENST00000486254 IGKV6D-41A0A0C4DH26 115 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 G3V3G9 751 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 RIMBP2O15034 1052 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 TPM3P06753 285 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 NR5A1Q13285 461 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 TPRNQ4KMQ1 711 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 DACT2Q5SW24 774 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 APOBEC3HQ6NTF7 200 aaKnown RBP13.73□□□□□ -0.21
PKP4-213ENST00000486254 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.73□□□□□ -0.21
PKP4-213ENST00000486254 CMTR1Q8N1G2 835 aaKnown RBP13.73□□□□□ -0.21
PKP4-213ENST00000486254 CCDC82Q8N4S0 544 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 SLC44A5Q8NCS7 719 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 IDI2Q9BXS1 227 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 OSBPL5Q9H0X9 879 aaPredicted RBP13.73□□□□□ -0.21
PKP4-213ENST00000486254 VPS33BQ9H267 617 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 DHX36Q9H2U1 1008 aaKnown RBP13.73□□□□□ -0.21
PKP4-213ENST00000486254 TUBE1Q9UJT0 475 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 SERPINA10Q9UK55 444 aa13.73□□□□□ -0.21
PKP4-213ENST00000486254 ADCY5O95622 1261 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 BAG6P46379 1132 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 IQCB1Q15051 598 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 EZH2Q15910 746 aaKnown RBP13.72□□□□□ -0.21
PKP4-213ENST00000486254 MSL1Q68DK7 614 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 OXER1Q8TDS5 423 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 CCDC12Q8WUD4 166 aaPredicted RBP13.72□□□□□ -0.21
PKP4-213ENST00000486254 CCDC17Q96LX7 622 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 FAM13BQ9NYF5 915 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 SAP30BPQ9UHR5 308 aaKnown RBP13.72□□□□□ -0.21
PKP4-213ENST00000486254 SERPINB13Q9UIV8 391 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 HOOK1Q9UJC3 728 aaKnown RBP13.72□□□□□ -0.21
PKP4-213ENST00000486254 ZKSCAN5Q9Y2L8 839 aa13.72□□□□□ -0.21
PKP4-213ENST00000486254 USP17L3A6NCW0 530 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 USP17L4A6NCW7 530 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 HLA-DOAP06340 250 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 SNHG28P0DPA3 235 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 MARCKSP29966 332 aaPredicted RBP13.71□□□□□ -0.21
PKP4-213ENST00000486254 ASPRV1Q53RT3 343 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 KANK3Q6NY19 840 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 USP17L1Q7RTZ2 530 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 PYM1Q9BRP8 204 aaKnown RBP13.71□□□□□ -0.21
PKP4-213ENST00000486254 KCNH3Q9ULD8 1083 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 SIPA1L1O43166 1804 aa13.71□□□□□ -0.21
PKP4-213ENST00000486254 ATRNL1Q5VV63 1379 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 ADAMTSL1Q8N6G6 1762 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 ESYT2A0FGR8 921 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 ECE2O60344 883 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 CDC25BP30305 580 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 CRKP46108 304 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 ARL6IP4Q66PJ3 421 aaKnown RBP13.71□□□□□ -0.22
PKP4-213ENST00000486254 CDC42EP5Q6NZY7 148 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 PSMD1Q99460 953 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 DNAJC25Q9H1X3 360 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 CABP5Q9NP86 173 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 RRAGDQ9NQL2 400 aaPredicted RBP13.71□□□□□ -0.22
PKP4-213ENST00000486254 USP40Q9NVE5 1235 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 BARHL2Q9NY43 387 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 MTMR4Q9NYA4 1195 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 PCDHA4Q9UN74 947 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 STX8Q9UNK0 236 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 PCDHB6Q9Y5E3 794 aa13.71□□□□□ -0.22
PKP4-213ENST00000486254 BAZ2BQ9UIF8 2168 aaKnown RBP13.71□□□□□ -0.22
PKP4-213ENST00000486254 M0R2N6 131 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 MYO1BO43795 1136 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 ZNF500O60304 480 aaPredicted RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 PARP1P09874 1014 aaKnown RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 NLRP5P59047 1200 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 ATP2C1P98194 919 aaPredicted RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 EN1Q05925 392 aaPredicted RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 ORC2Q13416 577 aaPredicted RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 ZRSR1Q15695 479 aaKnown RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 DOK7Q18PE1 504 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 OLFM4Q6UX06 510 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 KRBA2Q6ZNG9 492 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 LUZP1Q86V48 1076 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 CEP95Q96GE4 821 aa13.7□□□□□ -0.22
PKP4-213ENST00000486254 DDX4Q9NQI0 724 aaKnown RBP13.7□□□□□ -0.22
PKP4-213ENST00000486254 GOLGA6L6A8MZA4 724 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 MSNP26038 577 aaKnown RBP13.69□□□□□ -0.22
PKP4-213ENST00000486254 NLRP12P59046 1061 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 TTC38Q5R3I4 469 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 SOGA3Q5TF21 947 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 NT5DC1Q5TFE4 455 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 METTL16Q86W50 562 aaKnown RBP13.69□□□□□ -0.22
PKP4-213ENST00000486254 RTKN2Q8IZC4 609 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 BLIDQ8IZY5 108 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 ZMYND12Q9H0C1 365 aa13.69□□□□□ -0.22
PKP4-213ENST00000486254 KLRF2D3W0D1 207 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 GOLGA6L19H0YKK7 550 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 LAD1O00515 517 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 IKBKBO14920 756 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 CYTH3O43739 400 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 TTLL1O95922 423 aa13.68□□□□□ -0.22
PKP4-213ENST00000486254 SF3B2Q13435 895 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms