RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NMIQ13287 307 aaPredicted RBP20.21■□□□□ 0.83
VIM-205ENST00000485947 CWC27Q6UX04 472 aaKnown RBP20.21■□□□□ 0.83
VIM-205ENST00000485947 ACER1Q8TDN7 264 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 NACAP1Q9BZK3 213 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 KANSL2Q9H9L4 492 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 HELLSQ9NRZ9 838 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 RBPJLQ9UBG7 517 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 GABRQQ9UN88 632 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 PATL2C9JE40 543 aaKnown RBP20.2■□□□□ 0.82
VIM-205ENST00000485947 CHGBP05060 677 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 GJB1P08034 283 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 ERVK-9P63128 1117 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 ERVK-24P63145 666 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 SOCS4Q8WXH5 440 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 DYNLL2Q96FJ2 89 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 HOXC10Q9NYD6 342 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 BIN2Q9UBW5 565 aaPredicted RBP20.2■□□□□ 0.82
VIM-205ENST00000485947 TMX2Q9Y320 296 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 MGAMO43451 1857 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 ROBO3Q96MS0 1386 aa20.2■□□□□ 0.82
VIM-205ENST00000485947 XRCC5P13010 732 aaKnown RBP20.19■□□□□ 0.82
VIM-205ENST00000485947 ZMYM1Q5SVZ6 1142 aa20.19■□□□□ 0.82
VIM-205ENST00000485947 TRMT44Q8IYL2 757 aaKnown RBP20.19■□□□□ 0.82
VIM-205ENST00000485947 SLC44A5Q8NCS7 719 aa20.19■□□□□ 0.82
VIM-205ENST00000485947 GJD2Q9UKL4 321 aa20.19■□□□□ 0.82
VIM-205ENST00000485947 ZSWIM8A7E2V4 1837 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 A0A0D9SFI3 127 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 ECM2O94769 699 aaPredicted RBP20.18■□□□□ 0.82
VIM-205ENST00000485947 EN2P19622 333 aaPredicted RBP20.18■□□□□ 0.82
VIM-205ENST00000485947 ICA1Q05084 483 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 COG2Q14746 738 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 MCMDC2Q4G0Z9 681 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 CCAR1Q8IX12 1150 aaKnown RBP20.18■□□□□ 0.82
VIM-205ENST00000485947 FAM227BQ96M60 508 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 TBC1D32Q96NH3 1257 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 TXNRD2Q9NNW7 524 aa20.18■□□□□ 0.82
VIM-205ENST00000485947 A0A1W2PRG0 241 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 CCL5P13501 91 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 AKR1B1P15121 316 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 GJA8P48165 433 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 EVX2Q03828 476 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 ZYXQ15942 572 aaKnown RBP20.17■□□□□ 0.82
VIM-205ENST00000485947 KIAA1211Q6ZU35 1233 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 MB21D1Q8N884 522 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 NUDT12Q9BQG2 462 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 C22orf23Q9BZE7 217 aa20.17■□□□□ 0.82
VIM-205ENST00000485947 RPAP3Q9H6T3 665 aaPredicted RBP20.17■□□□□ 0.82
VIM-205ENST00000485947 CYP2D7A0A087X1C5 515 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 APPP05067 770 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 TDO2P48775 406 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 RBM25P49756 843 aaKnown RBP20.16■□□□□ 0.82
VIM-205ENST00000485947 SIAH1Q8IUQ4 282 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 USP26Q9BXU7 913 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 RNF208Q9H0X6 261 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 VCPKMTQ9H867 229 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 MKNK2Q9HBH9 465 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 ANO2Q9NQ90 1003 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 SYNPO2Q9UMS6 1093 aa20.16■□□□□ 0.82
VIM-205ENST00000485947 RBM19Q9Y4C8 960 aaKnown RBP20.16■□□□□ 0.82
VIM-205ENST00000485947 M0R2C6 588 aa20.15■□□□□ 0.82
VIM-205ENST00000485947 WDR46O15213 610 aaKnown RBP20.15■□□□□ 0.82
VIM-205ENST00000485947 HMGCRP04035 888 aa20.15■□□□□ 0.82
VIM-205ENST00000485947 SLC3A2P08195 630 aaKnown RBP20.15■□□□□ 0.82
VIM-205ENST00000485947 MTFR1Q15390 333 aa20.15■□□□□ 0.82
VIM-205ENST00000485947 IFNL3Q8IZI9 196 aa20.15■□□□□ 0.82
VIM-205ENST00000485947 IL25Q9H293 177 aa20.15■□□□□ 0.82
VIM-205ENST00000485947 CCDC171Q6TFL3 1326 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 SPDYE16A6NNV3 312 aaPredicted RBP20.14■□□□□ 0.81
VIM-205ENST00000485947 MINDY4BA8MYZ0 360 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 INHAP05111 366 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 Q3C1V9 767 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 PLEKHH3Q7Z736 793 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 PAGR1Q9BTK6 254 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 GOPCQ9HD26 462 aa20.14■□□□□ 0.81
VIM-205ENST00000485947 COLQQ9Y215 455 aaPredicted RBP20.14■□□□□ 0.81
VIM-205ENST00000485947 BAZ2AQ9UIF9 1905 aaKnown RBP20.14■□□□□ 0.81
VIM-205ENST00000485947 ELNP15502 786 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 RASA1P20936 1047 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 MCCP23508 829 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 PDE4BQ07343 736 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 PPP4R3BQ5MIZ7 849 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 POTEEQ6S8J3 1075 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 GPR142Q7Z601 462 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 ZNF444Q8N0Y2 327 aaPredicted RBP20.13■□□□□ 0.81
VIM-205ENST00000485947 USP6NLQ92738 828 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 LSG1Q9H089 658 aaKnown RBP20.13■□□□□ 0.81
VIM-205ENST00000485947 NAPBQ9H115 298 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 EPB41L4AQ9HCS5 686 aaPredicted RBP20.13■□□□□ 0.81
VIM-205ENST00000485947 NYAP2Q9P242 653 aa20.13■□□□□ 0.81
VIM-205ENST00000485947 CNMDO75829 334 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 SGPL1O95470 568 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 EEF2P13639 858 aaKnown RBP20.12■□□□□ 0.81
VIM-205ENST00000485947 RGS2P41220 211 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 MORN1Q5T089 497 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 SHCBP1Q8NEM2 672 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 TANGO6Q9C0B7 1094 aa20.12■□□□□ 0.81
VIM-205ENST00000485947 CWC22Q9HCG8 908 aaKnown RBP20.12■□□□□ 0.81
VIM-205ENST00000485947 PAK6Q9NQU5 681 aaPredicted RBP20.12■□□□□ 0.81
VIM-205ENST00000485947 RPTORQ8N122 1335 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 SLC15A5A6NIM6 579 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms