RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CEP350Q5VT06 3117 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 RFX7Q2KHR2 1363 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TSPY2A6NKD2 308 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 C19orf81C9J6K1 198 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 USP17L10C9JJH3 530 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 M0R2C6 588 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 FKTNO75072 461 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TSPY3P0CV98 308 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TSPY8P0CW00 308 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 SDSP20132 328 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TM4SF4P48230 202 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 NMIQ13287 307 aaPredicted RBP9.54□□□□□ -0.88
USP40-216ENST00000485943 SLFNL1Q499Z3 407 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 ZMYM1Q5SVZ6 1142 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 ERICH6BQ5W0A0 696 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TMEM179Q6ZVK1 233 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 SH3BP5LQ7L8J4 393 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 TICAM2Q86XR7 235 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 ERO1AQ96HE7 468 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 STRBPQ96SI9 672 aaKnown RBP9.54□□□□□ -0.88
USP40-216ENST00000485943 ZIC5Q96T25 663 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 OSBPL3Q9H4L5 887 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 PRDM10Q9NQV6 1147 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 PPP4R2Q9NY27 417 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 CTNNA3Q9UI47 895 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 ZNF112Q9UJU3 913 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 ZBTB21Q9ULJ3 1066 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 CCDC171Q6TFL3 1326 aa9.54□□□□□ -0.88
USP40-216ENST00000485943 LAMB1P07942 1786 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 PDHXO00330 501 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 RANBP6O60518 1105 aaKnown RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 HSPA8P11142 646 aaKnown RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 PLCD1P51178 756 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 HMGCS2P54868 508 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 ICA1Q05084 483 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 TRDNQ13061 729 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 IKQ13123 557 aaPredicted RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 MTMR2Q13614 643 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 IMMTQ16891 758 aaKnown RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 USP17L2Q6R6M4 530 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 MAMSTRQ6ZN01 415 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 CCDC129Q6ZRS4 1044 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 IFNL3Q8IZI9 196 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 DYNLL2Q96FJ2 89 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 SEC62Q99442 399 aaKnown RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 RNF41Q9H4P4 317 aaPredicted RBP9.53□□□□□ -0.88
USP40-216ENST00000485943 GOPCQ9HD26 462 aa9.53□□□□□ -0.88
USP40-216ENST00000485943 CASP8AP2Q9UKL3 1982 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 PHF20L1A8MW92 1017 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 ZNF213O14771 459 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 CYP2D6P10635 497 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 HOXD10P28358 340 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 CDK8P49336 464 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 PPARAQ07869 468 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 DGKZQ13574 1117 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 C12orf60Q5U649 245 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 WDR78Q5VTH9 848 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 CTR9Q6PD62 1173 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 PADI6Q6TGC4 694 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 ANKRD23Q86SG2 305 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 TTC13Q8NBP0 860 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 PROCA1Q8NCQ7 364 aaPredicted RBP9.52□□□□□ -0.89
USP40-216ENST00000485943 FAM227BQ96M60 508 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 TANGO6Q9C0B7 1094 aa9.52□□□□□ -0.89
USP40-216ENST00000485943 ZCCHC17Q9NP64 241 aaKnown RBP9.52□□□□□ -0.89
USP40-216ENST00000485943 CYP2D7A0A087X1C5 515 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 A0A0D9SFI3 127 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 BTBD19C9JJ37 291 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 GPR25O00155 361 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 FMNL1O95466 1100 aaPredicted RBP9.51□□□□□ -0.89
USP40-216ENST00000485943 GJA5P36382 358 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 SP3Q02447 781 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 CRHR2Q13324 411 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 MFSD6Q6ZSS7 791 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 C16orf86Q6ZW13 317 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 CCDC84Q86UT8 332 aaPredicted RBP9.51□□□□□ -0.89
USP40-216ENST00000485943 BRI3BPQ8WY22 251 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 KANSL2Q9H9L4 492 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 AGTPBP1Q9UPW5 1226 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 KCNH4Q9UQ05 1017 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 THSD7BQ9C0I4 1608 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 RAD50Q92878 1312 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 SALL3Q9BXA9 1300 aa9.51□□□□□ -0.89
USP40-216ENST00000485943 A0A0G2JLL6 359 aaPredicted RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 ERICH2A1L162 156 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 GSG1L2A8MUP6 293 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 IGF2BP3O00425 579 aaKnown RBP eCLIP9.5□□□□□ -0.89
USP40-216ENST00000485943 PRDM1O75626 825 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 CHGBP05060 677 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 SLURP2P0DP57 97 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 BACE1P56817 501 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 SEPT2Q15019 361 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 SBK1Q52WX2 424 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 TATDN1Q6P1N9 297 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 PRRT2Q7Z6L0 340 aaPredicted RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 RALYLQ86SE5 291 aaKnown RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 FAM43AQ8N2R8 423 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 SLC44A5Q8NCS7 719 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 GTF3C2Q8WUA4 911 aaPredicted RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 RBM27Q9P2N5 1060 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms