RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 KIF4BQ2VIQ3 1234 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 SH3TC2Q8TF17 1288 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 MKNK1Q9BUB5 465 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 API5Q9BZZ5 524 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 USP44Q9H0E7 712 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 IFT122Q9HBG6 1241 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 CD209Q9NNX6 404 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 MYOZ2Q9NPC6 264 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 TAGLN3Q9UI15 199 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 NSFL1CQ9UNZ2 370 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 PRKAB1Q9Y478 270 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 ESYT3A0FGR9 886 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 FAM177BA6PVY3 158 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 FAM200BP0CF97 657 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 FAM160A1Q05DH4 1040 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 IFIT5Q13325 482 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 FKBP5Q13451 457 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 TKFCQ3LXA3 575 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 UBE3BQ7Z3V4 1068 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 ZNF804AQ7Z570 1209 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 GTF3C2Q8WUA4 911 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 TBC1D22AQ8WUA7 517 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 ZNF594Q96JF6 807 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 GPR108Q9NPR9 543 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 COPRSQ9NQ92 184 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 DDX41Q9UJV9 622 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 DOCK1Q14185 1865 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 SHTN1A0MZ66 631 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 USP17L5A8MUK1 530 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 TRAPPC10P48553 1259 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 MASP1P48740 699 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 INHBEP58166 350 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 CHMP4BP1P59074 171 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 Q3C1V9 767 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 SLC4A10Q6U841 1118 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 FAM174AQ8TBP5 190 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 MYCBPQ99417 103 aaPredicted RBP6.31□□□□□ -1.4
CCDC39-205ENST00000485055 CAND2O75155 1236 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 APPP05067 770 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 LDHBP07195 334 aaKnown RBP6.31□□□□□ -1.4
CCDC39-205ENST00000485055 TDO2P48775 406 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 MAP3K9P80192 1104 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 TTF1Q15361 905 aaPredicted RBP6.31□□□□□ -1.4
CCDC39-205ENST00000485055 HHIPL2Q6UWX4 724 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 TAS1R3Q7RTX0 852 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 HSCBQ8IWL3 235 aa6.31□□□□□ -1.4
CCDC39-205ENST00000485055 DCPSQ96C86 337 aaKnown RBP6.31□□□□□ -1.4
CCDC39-205ENST00000485055 FAM163AQ96GL9 167 aaPredicted RBP6.31□□□□□ -1.4
CCDC39-205ENST00000485055 PTPRFP10586 1907 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 MAST3O60307 1309 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 COL6A1P12109 1028 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 KCNH2Q12809 1159 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 DPYDQ12882 1025 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 PPP2R5AQ15172 486 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 EPHA10Q5JZY3 1008 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 MAP1SQ66K74 1059 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 RGMBQ6NW40 437 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SLC51AQ86UW1 340 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ZNF513Q8N8E2 541 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SSH1Q8WYL5 1049 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 CAPNS2Q96L46 248 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 GBA2Q9HCG7 927 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 NEUROD4Q9HD90 331 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 CNTN3Q9P232 1028 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SRCAPQ6ZRS2 3230 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 C6orf229H3BNL8 230 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 FMNL1O95466 1100 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 MYL1P05976 194 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ZBTB48P10074 688 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SKIP12755 728 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ATF4P18848 351 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 RARSP54136 660 aaKnown RBP6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ZBED6P86452 979 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SCARF1Q14162 830 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ERAP2Q6P179 960 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 FAM83AQ86UY5 434 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ZSCAN30Q86W11 494 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 E2F7Q96AV8 911 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 CDCA5Q96FF9 252 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SUCLG2Q96I99 432 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SNTG2Q9NY99 539 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ANKIB1Q9P2G1 1089 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ANAPC4Q9UJX5 808 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 DAAM1Q9Y4D1 1078 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 SIPA1L1O43166 1804 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 ATAD5Q96QE3 1844 aa6.3□□□□□ -1.4
CCDC39-205ENST00000485055 MYH2Q9UKX2 1941 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 FOXN1O15353 648 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 RAD17O75943 681 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 PDE8BO95263 885 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 RBP3P10745 1247 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 NOS2P35228 1153 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 COL19A1Q14993 1142 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 PKN2Q16513 984 aaKnown RBP6.29□□□□□ -1.4
CCDC39-205ENST00000485055 AXDND1Q5T1B0 1012 aaPredicted RBP6.29□□□□□ -1.4
CCDC39-205ENST00000485055 RASAL3Q86YV0 1011 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 EGFL6Q8IUX8 553 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 C2orf69Q8N8R5 385 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 CCDC89Q8N998 374 aa6.29□□□□□ -1.4
CCDC39-205ENST00000485055 ERP27Q96DN0 273 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms