RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 AFMP43652 599 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 MPP2Q14168 576 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 BAHD1Q8TBE0 780 aaPredicted RBP5.78□□□□□ -1.48
VPS50-216ENST00000484954 CYB5D2Q8WUJ1 264 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 BRMS1Q9HCU9 246 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 ZSWIM5Q9P217 1185 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 CEP131Q9UPN4 1083 aa5.78□□□□□ -1.48
VPS50-216ENST00000484954 ZNF746Q6NUN9 644 aaPredicted RBP5.77□□□□□ -1.49
VPS50-216ENST00000484954 HOMEZQ8IX15 550 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 SLFN12Q8IYM2 578 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 ZNF296Q8WUU4 475 aaPredicted RBP5.77□□□□□ -1.49
VPS50-216ENST00000484954 UBE2FQ969M7 185 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 KIRREL1Q96J84 757 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 BACH2Q9BYV9 841 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 NSUN3Q9H649 340 aaKnown RBP5.77□□□□□ -1.49
VPS50-216ENST00000484954 UBP1Q9NZI7 540 aa5.77□□□□□ -1.49
VPS50-216ENST00000484954 HOXA5P20719 270 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 ETV3P41162 512 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 KIR3DL1P43629 444 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 TMEM67Q5HYA8 995 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 HS2ST1Q7LGA3 356 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 TMEM87AQ8NBN3 555 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 FBXO15Q8NCQ5 510 aaPredicted RBP5.76□□□□□ -1.49
VPS50-216ENST00000484954 C20orf173Q96LM9 149 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 KIF2CQ99661 725 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 LRRC3Q9BY71 257 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 DUSP15Q9H1R2 295 aaPredicted RBP5.76□□□□□ -1.49
VPS50-216ENST00000484954 C19orf73Q9NVV2 129 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 SUPT16HQ9Y5B9 1047 aaKnown RBP5.76□□□□□ -1.49
VPS50-216ENST00000484954 PCDHB14Q9Y5E9 798 aa5.76□□□□□ -1.49
VPS50-216ENST00000484954 ESR1P03372 595 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 TMEM253P0C7T8 217 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 CYP7A1P22680 504 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 YARSP54577 528 aaKnown RBP5.75□□□□□ -1.49
VPS50-216ENST00000484954 KRTAP1-1Q07627 177 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 TRIM26Q12899 539 aaPredicted RBP5.75□□□□□ -1.49
VPS50-216ENST00000484954 AMIGO3Q86WK7 504 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 DTWD2Q8NBA8 298 aa5.75□□□□□ -1.49
VPS50-216ENST00000484954 SLC22A31A6NKX4 558 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 POLR2BP30876 1174 aaKnown RBP5.74□□□□□ -1.49
VPS50-216ENST00000484954 ITGAEP38570 1179 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 KCNA10Q16322 511 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 SEZ6Q53EL9 994 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 CIAPIN1Q6FI81 312 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 ATG14Q6ZNE5 492 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 THAP5Q7Z6K1 395 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 PIWIL2Q8TC59 973 aaKnown RBP5.74□□□□□ -1.49
VPS50-216ENST00000484954 ANTXR1Q9H6X2 564 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 PCDHGB7Q9Y5F8 929 aa5.74□□□□□ -1.49
VPS50-216ENST00000484954 RBM47A0AV96 593 aaKnown RBP5.73□□□□□ -1.49
VPS50-216ENST00000484954 UBOX5O94941 541 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 SRFP11831 508 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 TNNI2P48788 182 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 FANCCQ00597 558 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 CLCQ05315 142 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 CWF19L2Q2TBE0 894 aaKnown RBP5.73□□□□□ -1.49
VPS50-216ENST00000484954 GAB4Q2WGN9 574 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 ZNF394Q53GI3 561 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 ARSHQ5FYA8 562 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 OVOS1Q6IE37 1185 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 RELTQ969Z4 430 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 EAF1Q96JC9 268 aaPredicted RBP5.73□□□□□ -1.49
VPS50-216ENST00000484954 COX4I2Q96KJ9 171 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 CCDC74BQ96LY2 380 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 KREMEN1Q96MU8 473 aa5.73□□□□□ -1.49
VPS50-216ENST00000484954 ROBO2Q9HCK4 1378 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 DNAJC25-GNG10A0A024R161 153 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 SHISA3A0PJX4 238 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 ATE1O95260 518 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 RECKO95980 971 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 TPP2P29144 1249 aaPredicted RBP5.72□□□□□ -1.49
VPS50-216ENST00000484954 ZNF76P36508 570 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 APOBRQ0VD83 1088 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 RALGPS1Q5JS13 557 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 DIEXFQ68CQ4 756 aaKnown RBP5.72□□□□□ -1.49
VPS50-216ENST00000484954 GK5Q6ZS86 529 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 PHACTR4Q8IZ21 702 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 RNF141Q8WVD5 230 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 VWCEQ96DN2 955 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 SLAMF8Q9P0V8 285 aa5.72□□□□□ -1.49
VPS50-216ENST00000484954 TCAF2A6NFQ2 919 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 CREG2Q8IUH2 290 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 ALPK1Q96QP1 1244 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 GPR62Q9BZJ7 368 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 EHMT1Q9H9B1 1298 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 CD320Q9NPF0 282 aa5.71□□□□□ -1.5
VPS50-216ENST00000484954 RGS13O14921 159 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 NUAK1O60285 661 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 RAG1P15918 1043 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 ERVFC1P60507 584 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 RACK1P63244 317 aaKnown RBP5.7□□□□□ -1.5
VPS50-216ENST00000484954 TMPRSS7Q7RTY8 843 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 TSPYL5Q86VY4 417 aaPredicted RBP5.7□□□□□ -1.5
VPS50-216ENST00000484954 KIAA0825Q8IV33 1275 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 SLITRK4Q8IW52 837 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 ATG4CQ96DT6 458 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 SPON2Q9BUD6 331 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 NT5C1AQ9BXI3 368 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 ADAMTS10Q9H324 1103 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 DCP1AQ9NPI6 582 aaPredicted RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms