RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 USP17L22D6RA61 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L17D6RBQ6 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L19D6RCP7 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L20D6RJB6 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 ELL2O00472 640 aaPredicted RBP10.07□□□□□ -0.8
USP54-211ENST00000474929 SEMA3EO15041 775 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 ACRP10323 421 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 ACLYP53396 1101 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L24Q0WX57 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 PTCRAQ6ISU1 281 aaPredicted RBP10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L2Q6R6M4 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 DZIP1Q86YF9 867 aaKnown RBP10.07□□□□□ -0.8
USP54-211ENST00000474929 ABRAQ8N0Z2 381 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 SHCBP1Q8NEM2 672 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 SLC9A7Q96T83 725 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 SEZ6LQ9BYH1 1024 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 MYH2Q9UKX2 1941 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 A0A0U1RQG5 324 aaPredicted RBP10.06□□□□□ -0.8
USP54-211ENST00000474929 ZBBXA8MT70 800 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 PROB1E7EW31 1015 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 CA3P07451 260 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 ZNF853P0CG23 659 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 NUBP1P53384 320 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 USP14P54578 494 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 FKBP5Q13451 457 aaPredicted RBP10.06□□□□□ -0.8
USP54-211ENST00000474929 OTOP2Q7RTS6 562 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 PCSK9Q8NBP7 692 aaKnown RBP10.06□□□□□ -0.8
USP54-211ENST00000474929 C12orf42Q96LP6 360 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 PPP1R12CQ9BZL4 782 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 BAHCC1Q9P281 2608 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 COL4A4P53420 1690 aaPredicted RBP10.06□□□□□ -0.8
USP54-211ENST00000474929 FAM186AA6NE01 2351 aa10.06□□□□□ -0.8
USP54-211ENST00000474929 ZBTB22O15209 634 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 PEX10O60683 326 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 PGK1P00558 417 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 ACTN1P12814 892 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 RABGGTBP53611 331 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 FLIIQ13045 1269 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 PHOSPHO2Q8TCD6 241 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 ARNTL2Q8WYA1 636 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 RUNDC1Q96C34 613 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 FAM163AQ96GL9 167 aaPredicted RBP10.05□□□□□ -0.8
USP54-211ENST00000474929 TRIM34Q9BYJ4 488 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 HIPK3Q9H422 1215 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 SPC25Q9HBM1 224 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 DENND2AQ9ULE3 1009 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 NDUFB9Q9Y6M9 179 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 CHD8Q9HCK8 2581 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 CACNA1FO60840 1977 aa10.05□□□□□ -0.8
USP54-211ENST00000474929 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 GRXCR2A6NFK2 248 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 GRM8O00222 908 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 ADAMTS4O75173 837 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 CNMDO75829 334 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 IL9P15248 144 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 KCNA5P22460 613 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 CST5P28325 142 aaPredicted RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 BTDP43251 543 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 GRB10Q13322 594 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 NBPF20Q3BBV1 942 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 FAM126BQ8IXS8 530 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 VGLL2Q8N8G2 317 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 LPIN2Q92539 896 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 FEZ1Q99689 392 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 DHX36Q9H2U1 1008 aaKnown RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 MROH8Q9H579 483 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 DDX4Q9NQI0 724 aaKnown RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 CNPY2Q9Y2B0 182 aa10.04□□□□□ -0.8
USP54-211ENST00000474929 KMT2BQ9UMN6 2715 aaPredicted RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 RIF1Q5UIP0 2472 aaKnown RBP10.04□□□□□ -0.8
USP54-211ENST00000474929 FAM196BA6NMK8 535 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 ARVCFO00192 962 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 CDK7P50613 346 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 ZP2Q05996 745 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 TCF15Q12870 199 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 HERC4Q5GLZ8 1057 aaPredicted RBP10.03□□□□□ -0.8
USP54-211ENST00000474929 SPTY2D1Q68D10 685 aaPredicted RBP10.03□□□□□ -0.8
USP54-211ENST00000474929 ADHFE1Q8IWW8 467 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 MB21D1Q8N884 522 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.03□□□□□ -0.8
USP54-211ENST00000474929 ATOH1Q92858 354 aaPredicted RBP10.03□□□□□ -0.8
USP54-211ENST00000474929 MAML3Q96JK9 1138 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 PI4KBQ9UBF8 816 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 MROH7-TTC4A0A0A0MT08 1334 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 SYNRGQ9UMZ2 1314 aa10.03□□□□□ -0.8
USP54-211ENST00000474929 RFXAPO00287 272 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 KRT37O76014 449 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 MYOGP15173 224 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 CYP2C18P33260 490 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 TAP1Q03518 808 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 MCTP2Q6DN12 878 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 ATF7IPQ6VMQ6 1270 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 CATSPERGQ6ZRH7 1159 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 MSL3Q8N5Y2 521 aaKnown RBP10.02□□□□□ -0.81
USP54-211ENST00000474929 PUS3Q9BZE2 481 aaKnown RBP10.02□□□□□ -0.81
USP54-211ENST00000474929 ZBTB21Q9ULJ3 1066 aa10.02□□□□□ -0.81
USP54-211ENST00000474929 DIS3Q9Y2L1 958 aaKnown RBP10.02□□□□□ -0.81
USP54-211ENST00000474929 PDS5AQ29RF7 1337 aaKnown RBP10.02□□□□□ -0.81
USP54-211ENST00000474929 C19orf67A6NJJ6 358 aa10.01□□□□□ -0.81
USP54-211ENST00000474929 FGFR2P21802 821 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms