RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RBM47A0AV96 593 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-212ENST00000474059 PEX10O60683 326 aa6.82□□□□□ -1.32
CCDC88A-212ENST00000474059 MIR1-1HGQ9H1L0 117 aa6.82□□□□□ -1.32
CCDC88A-212ENST00000474059 SLC6A17Q9H1V8 727 aa6.82□□□□□ -1.32
CCDC88A-212ENST00000474059 GPATCH2Q9NW75 528 aa6.82□□□□□ -1.32
CCDC88A-212ENST00000474059 TEX51A0A1B0GUA7 166 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 FAM221AA4D161 298 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 FITM1A5D6W6 292 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 PSPNO60542 156 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 DNAJA2O60884 412 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 SEMA7AO75326 666 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 SSPNQ14714 243 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 TSNAXIP1Q2TAA8 658 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 TMEM201Q5SNT2 666 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 PHC3Q8NDX5 983 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 RNF141Q8WVD5 230 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 LINC01599Q8WXQ3 324 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 JAG2Q9Y219 1238 aa6.81□□□□□ -1.32
CCDC88A-212ENST00000474059 TRIM13O60858 407 aa6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 PRPF40AO75400 957 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 PDE4BQ07343 736 aa6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 BNC2Q6ZN30 1099 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 VWCEQ96DN2 955 aa6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 CWC22Q9HCG8 908 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-212ENST00000474059 PRR36Q9H6K5 1346 aa6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 CILPO75339 1184 aa6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 LTKP29376 864 aa6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 SLFN12Q8IYM2 578 aa6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 FAM13CQ8NE31 585 aa6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 JARID2Q92833 1246 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 DUSP9Q99956 384 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 POLR3KQ9Y2Y1 108 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-212ENST00000474059 SUPT5HO00267 1087 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 CTSHP09668 335 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 PLCG1P19174 1290 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 NLRX1Q86UT6 975 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 OXR1Q8N573 874 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 MARCH10Q8NA82 808 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 PANK1Q8TE04 598 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 KREMEN1Q96MU8 473 aa6.78□□□□□ -1.32
CCDC88A-212ENST00000474059 BMP7P18075 431 aa6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 RELTQ969Z4 430 aa6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 EPB41L4AQ9HCS5 686 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 MBD1Q9UIS9 605 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 GPR160Q9UJ42 338 aa6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 KCTD3Q9Y597 815 aa6.77□□□□□ -1.33
CCDC88A-212ENST00000474059 ADAMTS20P59510 1910 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 CHURC1-FNTBB4DL54 471 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 F6X3S4 739 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 FOXD2O60548 495 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 ANKS4BQ8N8V4 417 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 REV1Q9UBZ9 1251 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 KCNH3Q9ULD8 1083 aa6.76□□□□□ -1.33
CCDC88A-212ENST00000474059 F13A1P00488 732 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 LMNB1P20700 586 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 SNX17Q15036 470 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 CCDC84Q86UT8 332 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 DHX38Q92620 1227 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 RHOVQ96L33 236 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 NOC4LQ9BVI4 516 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 HDAC8Q9BY41 377 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 XYLT2Q9H1B5 865 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 ZCCHC4Q9H5U6 513 aa6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 CNOT6Q9ULM6 557 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-212ENST00000474059 EPHB3P54753 998 aa6.74□□□□□ -1.33
CCDC88A-212ENST00000474059 CHRNEQ04844 493 aa6.74□□□□□ -1.33
CCDC88A-212ENST00000474059 ASPNQ9BXN1 380 aa6.74□□□□□ -1.33
CCDC88A-212ENST00000474059 RTEL1Q9NZ71 1219 aa6.74□□□□□ -1.33
CCDC88A-212ENST00000474059 TMEM82A0PJX8 343 aa6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 USP2O75604 605 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 PI3P19957 117 aa6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 PDE6BP35913 854 aa6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 CEBPAP49715 358 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 ST13P50502 369 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 YARSP54577 528 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 USHBP1Q8N6Y0 703 aa6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 GATAD2BQ8WXI9 593 aa6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 DACT3Q96B18 629 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-212ENST00000474059 HTR3BO95264 441 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 PF4P02776 101 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 LMNB2Q03252 620 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 DUSP4Q13115 394 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 CAMK2GQ13555 558 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 TCERG1LQ5VWI1 586 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 SPPL2CQ8IUH8 684 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 SIRT2Q8IXJ6 389 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 CNTD2Q9H8S5 307 aa6.72□□□□□ -1.33
CCDC88A-212ENST00000474059 USP31Q70CQ4 1352 aa6.71□□□□□ -1.33
CCDC88A-212ENST00000474059 HRKO00198 91 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 NRDCO43847 1150 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 UBOX5O94941 541 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 GARTP22102 1010 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 DAB2P98082 770 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 NFKB2Q00653 900 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 KCNA1Q09470 495 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 TAF1CQ15572 869 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 SKOR2Q2VWA4 1001 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 ZNF385BQ569K4 471 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 ZPBP2Q6X784 338 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 FBXO27Q8NI29 283 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms