RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PARP1P09874 1014 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 KLHL30Q0D2K2 578 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 CEP85Q6P2H3 762 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 SND1Q7KZF4 910 aaKnown RBP eCLIP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 FNBP4Q8N3X1 1017 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 HAUS7Q99871 368 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 SHROOM2Q13796 1616 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 MYO18AQ92614 2054 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 CUL1Q13616 776 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 PCP11498 1178 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 STAT1P42224 750 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 PHEXP78562 749 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 APLFQ8IW19 511 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 TPX2Q9ULW0 747 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 XRCC5P13010 732 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 KPNA2P52292 529 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 SLC9C2Q5TAH2 1124 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 EIF4G3O43432 1585 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 TRPM2O94759 1503 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 KRT5P13647 590 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 GFAPP14136 432 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 ATP6V1E1P36543 226 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 MRPL50Q8N5N7 158 aaKnown RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 CDKL2Q92772 493 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 ZNF449Q6P9G9 518 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 DCUN1D2Q6PH85 259 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 ANKRD2Q9GZV1 360 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 CLASP1Q7Z460 1538 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 WDR46O15213 610 aaKnown RBP14.62□□□□□ -0.07
COL6A3-209ENST00000472056 FAM96AQ9H5X1 160 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 FAM8A1Q9UBU6 413 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 LCMT1Q9UIC8 334 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 NT5C2P49902 561 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 KRT25Q7Z3Z0 450 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 RSAD2Q8WXG1 361 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 GARSP41250 739 aaKnown RBP14.62□□□□□ -0.07
COL6A3-209ENST00000472056 PDE4DQ08499 809 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 TMTC3Q6ZXV5 915 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 STK38LQ9Y2H1 464 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 CYP7A1P22680 504 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 MMS22LQ6ZRQ5 1243 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 PLCD3Q8N3E9 789 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 KRIT1O00522 736 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 COL17A1Q9UMD9 1497 aaPredicted RBP14.62□□□□□ -0.07
COL6A3-209ENST00000472056 NR1H3Q13133 447 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 TRIM15Q9C019 465 aa14.62□□□□□ -0.07
COL6A3-209ENST00000472056 MAP3K7O43318 606 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 CTAGE3PQ8IX95 158 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 CCDC13Q8IYE1 715 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 LRGUKQ96M69 825 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 DCTN3O75935 186 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 DACT3Q96B18 629 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-209ENST00000472056 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-209ENST00000472056 HSP90AA4PQ58FG1 418 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 METTL14Q9HCE5 456 aaKnown RBP14.61□□□□□ -0.07
COL6A3-209ENST00000472056 REREQ9P2R6 1566 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 LAD1O00515 517 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 RABEP2Q9H5N1 569 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 STRN3Q13033 797 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 RRAGDQ9NQL2 400 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-209ENST00000472056 NUMA1Q14980 2115 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 SPECC1L-ADORA2AF8WAN1 911 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 ANKRD35Q8N283 1001 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 LMBRD1Q9NUN5 540 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 EMBQ6PCB8 327 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 KLHDC4Q8TBB5 520 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 PIP4K2CQ8TBX8 421 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 OLFM3Q96PB7 478 aa14.61□□□□□ -0.07
COL6A3-209ENST00000472056 ARHGAP31Q2M1Z3 1444 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 SERPINB6P35237 376 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 IFT122Q9HBG6 1241 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 VAT1LQ9HCJ6 419 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 MRGBPQ9NV56 204 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 ABCC2Q92887 1545 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 IPO5O00410 1097 aaKnown RBP14.6□□□□□ -0.07
COL6A3-209ENST00000472056 CDC23Q9UJX2 597 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 POTEB3A0JP26 581 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 GLE1Q53GS7 698 aaKnown RBP14.6□□□□□ -0.07
COL6A3-209ENST00000472056 PDXDC1Q6P996 788 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 POTEBQ6S5H4 581 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 DRP2Q13474 957 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 PALM2Q8IXS6 379 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 PALM3A6NDB9 673 aaPredicted RBP14.6□□□□□ -0.07
COL6A3-209ENST00000472056 SYF2O95926 243 aaKnown RBP14.6□□□□□ -0.07
COL6A3-209ENST00000472056 TSC22D3Q99576 134 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 RGS12O14924 1447 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 RASGRF2O14827 1237 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 FLT4P35916 1363 aa14.6□□□□□ -0.07
COL6A3-209ENST00000472056 TMEM232C9JQI7 657 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 NOP14P78316 857 aaKnown RBP14.59□□□□□ -0.07
COL6A3-209ENST00000472056 NELFBQ8WX92 580 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 PSPC1Q8WXF1 523 aaKnown RBP14.59□□□□□ -0.07
COL6A3-209ENST00000472056 POLE3Q9NRF9 147 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 CXorf38Q8TB03 319 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 CHUKO15111 745 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 DAPK3O43293 454 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 INTS9Q9NV88 658 aaKnown RBP14.59□□□□□ -0.07
COL6A3-209ENST00000472056 NOP53Q9NZM5 478 aaKnown RBP14.59□□□□□ -0.07
COL6A3-209ENST00000472056 MID2Q9UJV3 735 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 HNRNPCL1O60812 293 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms