RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 SPOCK3Q9BQ16 436 aa8.15□□□□□ -1.1
CKS1B-204ENST00000471245 CEP41Q9BYV8 373 aa8.15□□□□□ -1.1
CKS1B-204ENST00000471245 PICK1Q9NRD5 415 aa8.15□□□□□ -1.1
CKS1B-204ENST00000471245 KLHL3Q9UH77 587 aa8.15□□□□□ -1.1
CKS1B-204ENST00000471245 GOLGA3Q08378 1498 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 PHLDB1Q86UU1 1377 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 ANKRD62A6NC57 917 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 UPK3BL1B0FP48 263 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 UPK3BL2E5RIL1 263 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 PROCP04070 461 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 IREB2P48200 963 aaKnown RBP8.14□□□□□ -1.11
CKS1B-204ENST00000471245 NCAPHQ15003 741 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 TCEAL1Q15170 157 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 ARSHQ5FYA8 562 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 C6orf15Q6UXA7 325 aaPredicted RBP8.14□□□□□ -1.11
CKS1B-204ENST00000471245 UNC5AQ6ZN44 842 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 HID1Q8IV36 788 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 KCT2Q8NC54 265 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 GSX1Q9H4S2 264 aaPredicted RBP8.14□□□□□ -1.11
CKS1B-204ENST00000471245 DISC1Q9NRI5 854 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 TJP2Q9UDY2 1190 aa8.14□□□□□ -1.11
CKS1B-204ENST00000471245 NEO1Q92859 1461 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 STRCQ7RTU9 1775 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 ARID4BQ4LE39 1312 aaPredicted RBP8.13□□□□□ -1.11
CKS1B-204ENST00000471245 DDAH1O94760 285 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 TIAF1O95411 115 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 CAP2P40123 477 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 UVSSAQ2YD98 709 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 SLC6A19Q695T7 634 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 FAM13CQ8NE31 585 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 TMEM87BQ96K49 555 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 SLC9A7Q96T83 725 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 DNAJC7Q99615 494 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 AP4E1Q9UPM8 1137 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 PREX1Q8TCU6 1659 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 ATP10BO94823 1461 aa8.13□□□□□ -1.11
CKS1B-204ENST00000471245 B2RBV5 119 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 CHURC1-FNTBB4DL54 471 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 CLSTN1O94985 981 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 ALX3O95076 343 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 RAG1P15918 1043 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 SOX4Q06945 474 aaPredicted RBP8.12□□□□□ -1.11
CKS1B-204ENST00000471245 ZYXQ15942 572 aaKnown RBP8.12□□□□□ -1.11
CKS1B-204ENST00000471245 MTERF2Q49AM1 385 aa8.12□□□□□ -1.11
CKS1B-204ENST00000471245 LTBP3Q9NS15 1303 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 TTC37Q6PGP7 1564 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 MRM1Q6IN84 353 aaKnown RBP8.11□□□□□ -1.11
CKS1B-204ENST00000471245 VHLLQ6RSH7 139 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 ZNF662Q6ZS27 426 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 EEPD1Q7L9B9 569 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 JMYQ8N9B5 988 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 SH3TC2Q8TF17 1288 aa8.11□□□□□ -1.11
CKS1B-204ENST00000471245 SBNO2Q9Y2G9 1366 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 NEFMP07197 916 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 TTLL4Q14679 1199 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 PLEKHG4Q58EX7 1191 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 FDX2Q6P4F2 183 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 AGGF1Q8N302 714 aaeCLIP8.1□□□□□ -1.11
CKS1B-204ENST00000471245 LILRB2Q8N423 598 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 FAM46AQ96IP4 442 aaKnown RBP8.1□□□□□ -1.11
CKS1B-204ENST00000471245 MEGF10Q96KG7 1140 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 PSMG3-AS1Q96PY0 264 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 UBL7Q96S82 380 aaPredicted RBP8.1□□□□□ -1.11
CKS1B-204ENST00000471245 EPN3Q9H201 632 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 FBRSQ9HAH7 460 aa8.1□□□□□ -1.11
CKS1B-204ENST00000471245 ZNF214Q9UL59 606 aaPredicted RBP8.1□□□□□ -1.11
CKS1B-204ENST00000471245 FANCAO15360 1455 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 RGS13O14921 159 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 H2AFB1P0C5Y9 115 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 H2AFB2P0C5Z0 115 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 CHMP4BP1P59074 171 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 SLC7A5Q01650 507 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 BBS9Q3SYG4 887 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 C2orf27AQ580R0 203 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 CDC37L1Q7L3B6 337 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 PHACTR4Q8IZ21 702 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 THAP3Q8WTV1 239 aaPredicted RBP8.09□□□□□ -1.11
CKS1B-204ENST00000471245 KLHL6Q8WZ60 621 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 DHRS1Q96LJ7 313 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 PIDD1Q9HB75 910 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 TMEM260Q9NX78 707 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.09□□□□□ -1.11
CKS1B-204ENST00000471245 RAPGEF6Q8TEU7 1601 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 CFAP74Q9C0B2 1584 aa8.09□□□□□ -1.11
CKS1B-204ENST00000471245 ZMYM4Q5VZL5 1548 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 CDC45O75419 566 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 CST3P01034 146 aaPredicted RBP8.08□□□□□ -1.12
CKS1B-204ENST00000471245 GLB1P16278 677 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 POLR2BP30876 1174 aaKnown RBP8.08□□□□□ -1.12
CKS1B-204ENST00000471245 SLBPQ14493 270 aaKnown RBP eCLIP8.08□□□□□ -1.12
CKS1B-204ENST00000471245 SLC51AQ86UW1 340 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 HOMER1Q86YM7 354 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 C2CD4AQ8NCU7 369 aaPredicted RBP8.08□□□□□ -1.12
CKS1B-204ENST00000471245 CYB5D2Q8WUJ1 264 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 APPBP2Q92624 585 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 ISL2Q96A47 359 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 CCDC74BQ96LY2 380 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 TPSG1Q9NRR2 321 aa8.08□□□□□ -1.12
CKS1B-204ENST00000471245 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.07□□□□□ -1.12
CKS1B-204ENST00000471245 HCLS1P14317 486 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms