RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 RNPC3Q96LT9 517 aaKnown RBP17.68■□□□□ 0.42
CXCR4-203ENST00000466288 GPR108Q9NPR9 543 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 FOCADQ5VW36 1801 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 CDK5RAP2Q96SN8 1893 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 CYP7A1P22680 504 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 TNNI3KQ59H18 835 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 FAM47AQ5JRC9 791 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 SHCBP1Q8NEM2 672 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 ARHGAP45Q92619 1136 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 ZNF512BQ96KM6 892 aaPredicted RBP17.67■□□□□ 0.42
CXCR4-203ENST00000466288 SPATC1LQ9H0A9 340 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 TACC3Q9Y6A5 838 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 FPGT-TNNI3KV9GXZ4 949 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 XIRP2A4UGR9 3374 aa17.67■□□□□ 0.42
CXCR4-203ENST00000466288 TNFRSF10AO00220 468 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 GNAI2P04899 355 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 ERCC3P19447 782 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 SHMT1P34896 483 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 USP5P45974 858 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 COG2Q14746 738 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 MIGA1Q8NAN2 632 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 HOXC10Q9NYD6 342 aa17.66■□□□□ 0.42
CXCR4-203ENST00000466288 ZNF236Q9UL36 1845 aa17.65■□□□□ 0.42
CXCR4-203ENST00000466288 A0A1W2PRG0 241 aa17.65■□□□□ 0.42
CXCR4-203ENST00000466288 PLCD1P51178 756 aa17.65■□□□□ 0.42
CXCR4-203ENST00000466288 CABP5Q9NP86 173 aa17.65■□□□□ 0.42
CXCR4-203ENST00000466288 PHF24Q9UPV7 400 aa17.65■□□□□ 0.42
CXCR4-203ENST00000466288 KIAA0355O15063 1070 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 CLTBP09497 229 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 RARSP54136 660 aaKnown RBP17.64■□□□□ 0.41
CXCR4-203ENST00000466288 TTC6Q86TZ1 520 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 CERS3Q8IU89 383 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 MAML3Q96JK9 1138 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 CHD9Q3L8U1 2897 aa17.64■□□□□ 0.41
CXCR4-203ENST00000466288 DNAJB2P25686 324 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 SEPT2Q15019 361 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 ABRAQ8N0Z2 381 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 SLC5A4Q9NY91 659 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 GABPAQ06546 454 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 MROH8Q9H579 483 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 XPNPEP3Q9NQH7 507 aa17.63■□□□□ 0.41
CXCR4-203ENST00000466288 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.62■□□□□ 0.41
CXCR4-203ENST00000466288 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.62■□□□□ 0.41
CXCR4-203ENST00000466288 IDH1O75874 414 aaKnown RBP17.62■□□□□ 0.41
CXCR4-203ENST00000466288 RAG1P15918 1043 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 KIAA1755Q5JYT7 1200 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 MAGEB6Q8N7X4 407 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 MB21D1Q8N884 522 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 TANGO6Q9C0B7 1094 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 ZNF576Q9H609 170 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 RAPGEFL1Q9UHV5 662 aa17.62■□□□□ 0.41
CXCR4-203ENST00000466288 DBNLQ9UJU6 430 aaKnown RBP17.62■□□□□ 0.41
CXCR4-203ENST00000466288 PQBP1O60828 265 aaKnown RBP17.61■□□□□ 0.41
CXCR4-203ENST00000466288 RARBP10826 455 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 DSG3P32926 999 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 FPGSQ05932 587 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 POLA2Q14181 598 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 NCAPG2Q86XI2 1143 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 TLR7Q9NYK1 1049 aaKnown RBP17.61■□□□□ 0.41
CXCR4-203ENST00000466288 NRBP1Q9UHY1 535 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 TNNQ9UQP3 1299 aa17.61■□□□□ 0.41
CXCR4-203ENST00000466288 A0A1W2PQ45 241 aaPredicted RBP17.6■□□□□ 0.41
CXCR4-203ENST00000466288 A0A1W2PQY0 241 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 PGK1P00558 417 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 FAAP100Q0VG06 881 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 RNF180Q86T96 592 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 TIFAQ96CG3 184 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 RIOK1Q9BRS2 568 aaKnown RBP17.6■□□□□ 0.41
CXCR4-203ENST00000466288 TMEM39AQ9NV64 488 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 CHD7Q9P2D1 2997 aa17.6■□□□□ 0.41
CXCR4-203ENST00000466288 FCER1AP12319 257 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 TRIM27P14373 513 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 EVX2Q03828 476 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 PLS1Q14651 629 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 ANKRD33Q7Z3H0 272 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 ATG4CQ96DT6 458 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 ANTXR1Q9H6X2 564 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 A0A0G2JMZ2 1700 aa17.59■□□□□ 0.41
CXCR4-203ENST00000466288 MYO5AQ9Y4I1 1855 aaKnown RBP17.59■□□□□ 0.41
CXCR4-203ENST00000466288 MYH1P12882 1939 aa17.58■□□□□ 0.41
CXCR4-203ENST00000466288 TAL1P17542 331 aaPredicted RBP17.58■□□□□ 0.41
CXCR4-203ENST00000466288 OS9Q13438 667 aaPredicted RBP17.58■□□□□ 0.41
CXCR4-203ENST00000466288 SSH3Q8TE77 659 aa17.58■□□□□ 0.41
CXCR4-203ENST00000466288 ATXN2LQ8WWM7 1075 aaKnown RBP17.58■□□□□ 0.41
CXCR4-203ENST00000466288 TOX2Q96NM4 488 aa17.58■□□□□ 0.41
CXCR4-203ENST00000466288 CCDC8Q9H0W5 538 aaPredicted RBP17.58■□□□□ 0.41
CXCR4-203ENST00000466288 ROBO3Q96MS0 1386 aa17.58■□□□□ 0.4
CXCR4-203ENST00000466288 REV3LO60673 3130 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 MPHOSPH10O00566 681 aaKnown RBP17.57■□□□□ 0.4
CXCR4-203ENST00000466288 ADAMTS4O75173 837 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 FLOT1O75955 427 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 POLR3DP05423 398 aaPredicted RBP17.57■□□□□ 0.4
CXCR4-203ENST00000466288 ZNF865P0CJ78 1059 aaPredicted RBP17.57■□□□□ 0.4
CXCR4-203ENST00000466288 TMEM132BQ14DG7 1078 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 SIAH1Q8IUQ4 282 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.57■□□□□ 0.4
CXCR4-203ENST00000466288 TINF2Q9BSI4 451 aa17.57■□□□□ 0.4
CXCR4-203ENST00000466288 SURF6O75683 361 aaKnown RBP17.56■□□□□ 0.4
CXCR4-203ENST00000466288 MAP3K12Q12852 859 aa17.56■□□□□ 0.4
CXCR4-203ENST00000466288 TMED8Q6PL24 325 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms