RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MOV10L1Q9BXT6 1211 aaKnown RBP27.37■■□□□ 1.97
USP4-208ENST00000464168 DDX20Q9UHI6 824 aaKnown RBP27.37■■□□□ 1.97
USP4-208ENST00000464168 ZBED9Q6R2W3 1325 aa27.37■■□□□ 1.97
USP4-208ENST00000464168 TRPV1Q8NER1 839 aa27.36■■□□□ 1.97
USP4-208ENST00000464168 ARMT1Q9H993 441 aa27.36■■□□□ 1.97
USP4-208ENST00000464168 ZBTB40Q9NUA8 1239 aa27.36■■□□□ 1.97
USP4-208ENST00000464168 MS4A1P11836 297 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 CNGA1P29973 690 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 SLFNL1Q499Z3 407 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 TMEM179Q6ZVK1 233 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 SIAH1Q8IUQ4 282 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 SLC17A8Q8NDX2 589 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 DYNLL2Q96FJ2 89 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 TANGO6Q9C0B7 1094 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 SENP6Q9GZR1 1112 aaPredicted RBP27.35■■□□□ 1.97
USP4-208ENST00000464168 BCL11AQ9H165 835 aa27.35■■□□□ 1.97
USP4-208ENST00000464168 PRKAB2O43741 272 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 STRNO43815 780 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 MSCO60682 206 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 HMMRO75330 724 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 LPAR1Q92633 364 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 SPATC1LQ9H0A9 340 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 SWAP70Q9UH65 585 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 NAV1Q8NEY1 1877 aa27.34■■□□□ 1.97
USP4-208ENST00000464168 ADORA2AP29274 412 aa27.33■■□□□ 1.97
USP4-208ENST00000464168 DPP9Q86TI2 863 aa27.33■■□□□ 1.97
USP4-208ENST00000464168 DEFB123Q8N688 67 aa27.33■■□□□ 1.97
USP4-208ENST00000464168 PAG1Q9NWQ8 432 aa27.33■■□□□ 1.97
USP4-208ENST00000464168 LAMA2P24043 3122 aaKnown RBP27.33■■□□□ 1.97
USP4-208ENST00000464168 RAB11FIP3O75154 756 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 CYBAP13498 195 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 ADD2P35612 726 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 Q7L0L9 218 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 SHCBP1Q8NEM2 672 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 BOLA2Q9H3K6 86 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 ATP8A2Q9NTI2 1148 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 DDX19BQ9UMR2 479 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 COG6Q9Y2V7 657 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 CUL9Q8IWT3 2517 aa27.32■■□□□ 1.96
USP4-208ENST00000464168 SMIM22K7EJ46 135 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 MBD4O95243 580 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 AKR1B1P15121 316 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 ERCC3P19447 782 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 DSG3P32926 999 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 MDM2Q00987 491 aaPredicted RBP27.31■■□□□ 1.96
USP4-208ENST00000464168 OLFML2BQ68BL8 750 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 CLEC10AQ8IUN9 316 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 MB21D1Q8N884 522 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 TMX2Q9Y320 296 aa27.31■■□□□ 1.96
USP4-208ENST00000464168 DNM1LO00429 736 aa27.3■■□□□ 1.96
USP4-208ENST00000464168 COBLO75128 1261 aa27.3■■□□□ 1.96
USP4-208ENST00000464168 ATP5JP18859 108 aa27.3■■□□□ 1.96
USP4-208ENST00000464168 SPICE1Q8N0Z3 855 aa27.3■■□□□ 1.96
USP4-208ENST00000464168 CHGBP05060 677 aa27.29■■□□□ 1.96
USP4-208ENST00000464168 ATN1P54259 1190 aaPredicted RBP27.29■■□□□ 1.96
USP4-208ENST00000464168 C12orf60Q5U649 245 aa27.29■■□□□ 1.96
USP4-208ENST00000464168 ARHGEF10LQ9HCE6 1279 aa27.29■■□□□ 1.96
USP4-208ENST00000464168 RLFQ13129 1914 aa27.29■■□□□ 1.96
USP4-208ENST00000464168 CYP2D7A0A087X1C5 515 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 FLOT1O75955 427 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 CDK8P49336 464 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 ICA1Q05084 483 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 ATG4CQ96DT6 458 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 CCDC17Q96LX7 622 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 HAUS7Q99871 368 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 MROH8Q9H579 483 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 VCPKMTQ9H867 229 aa27.28■■□□□ 1.96
USP4-208ENST00000464168 FRMPD3Q5JV73 1810 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 USP17L12C9JPN9 530 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 USP17L21D6R901 530 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 PLS1Q14651 629 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 GJC2Q5T442 439 aaPredicted RBP27.27■■□□□ 1.96
USP4-208ENST00000464168 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.27■■□□□ 1.96
USP4-208ENST00000464168 SH2D4AQ9H788 454 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 MTMR10Q9NXD2 777 aa27.27■■□□□ 1.96
USP4-208ENST00000464168 DIEXFQ68CQ4 756 aaKnown RBP27.26■■□□□ 1.95
USP4-208ENST00000464168 ABRAQ8N0Z2 381 aa27.26■■□□□ 1.95
USP4-208ENST00000464168 ARRDC4Q8NCT1 418 aa27.26■■□□□ 1.95
USP4-208ENST00000464168 ZNF236Q9UL36 1845 aa27.25■■□□□ 1.95
USP4-208ENST00000464168 UBE3CQ15386 1083 aa27.25■■□□□ 1.95
USP4-208ENST00000464168 C16orf86Q6ZW13 317 aa27.25■■□□□ 1.95
USP4-208ENST00000464168 NCAPG2Q86XI2 1143 aa27.25■■□□□ 1.95
USP4-208ENST00000464168 SLC5A4Q9NY91 659 aa27.25■■□□□ 1.95
USP4-208ENST00000464168 A0A0G2JMZ2 1700 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 DLL1O00548 723 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 WDR46O15213 610 aaKnown RBP27.24■■□□□ 1.95
USP4-208ENST00000464168 SEPT4O43236 478 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 RTP1P59025 263 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 TMEM132BQ14DG7 1078 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 PRAMEF19Q5SWL8 479 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 ANO1Q5XXA6 986 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 LBHD1Q9BQE6 289 aaPredicted RBP27.24■■□□□ 1.95
USP4-208ENST00000464168 ADAMTS5Q9UNA0 930 aa27.24■■□□□ 1.95
USP4-208ENST00000464168 EEF2P13639 858 aaKnown RBP27.23■■□□□ 1.95
USP4-208ENST00000464168 SAMD1Q6SPF0 538 aaPredicted RBP27.23■■□□□ 1.95
USP4-208ENST00000464168 STXBP5LQ9Y2K9 1186 aa27.23■■□□□ 1.95
USP4-208ENST00000464168 SLC4A4Q9Y6R1 1079 aa27.23■■□□□ 1.95
USP4-208ENST00000464168 FCER1AP12319 257 aa27.22■■□□□ 1.95
USP4-208ENST00000464168 CTR9Q6PD62 1173 aa27.22■■□□□ 1.95
USP4-208ENST00000464168 AMOTL1Q8IY63 956 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms