RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 BLZF1Q9H2G9 400 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 ADCK5Q3MIX3 580 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 KRT71Q3SY84 523 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 RRAGAQ7L523 313 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 ERCC3P19447 782 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 C2CD5Q86YS7 1000 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 GPR108Q9NPR9 543 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 COPRSQ9NQ92 184 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 DENND2CQ68D51 928 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 EDC3Q96F86 508 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 PLEKHA4Q9H4M7 779 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 ADCY7P51828 1080 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 CLIC4Q9Y696 253 aa21.05■□□□□ 0.96
CCDC88B-204ENST00000463837 LIN9Q5TKA1 542 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 PDE11AQ9HCR9 933 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 EPN1Q9Y6I3 576 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 MED23Q9ULK4 1368 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 CCDC151A5D8V7 595 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 GSDMAQ96QA5 445 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 VPS54Q9P1Q0 977 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 VSIG1Q86XK7 387 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 NT5C3AQ9H0P0 336 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 MAGEF1Q9HAY2 307 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 ANAPC4Q9UJX5 808 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 CAPN7Q9Y6W3 813 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 NEDD9Q14511 834 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 IL17REQ8NFR9 667 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 EXOC4Q96A65 974 aa21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 RBM17Q96I25 401 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-204ENST00000463837 CALCRLQ16602 461 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 INF2Q27J81 1249 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 ARID4AP29374 1257 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 HIBADHP31937 336 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 ERBB4Q15303 1308 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 LONRF2Q1L5Z9 754 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 WDR44Q5JSH3 913 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 C11orf57Q6ZUT1 292 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 TXNDC16Q9P2K2 825 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 PRDM1O75626 825 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 CTNNA1P35221 906 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 HERC4Q5GLZ8 1057 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 GALNT17Q6IS24 598 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 SARM1Q6SZW1 724 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 NSUN7Q8NE18 718 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 BCAS4Q8TDM0 211 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 PSMD1Q99460 953 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 BTG4Q9NY30 223 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 FEZ2Q9UHY8 353 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 JAG2Q9Y219 1238 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 CARMIL3Q8ND23 1372 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 PPARAQ07869 468 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 CCDC14Q49A88 953 aa21.03■□□□□ 0.96
CCDC88B-204ENST00000463837 SLC8A1P32418 973 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 CTTNBP2NLQ9P2B4 639 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 CEP85LQ5SZL2 805 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 UNC5CLQ8IV45 518 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 TEX11Q8IYF3 940 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 PPP1R12CQ9BZL4 782 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 FAM207AQ9NSI2 230 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 EXOC7Q9UPT5 735 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 RASSF2P50749 326 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 PDLIM2Q96JY6 352 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 VCXQ9H320 206 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 AMFRQ9UKV5 643 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 CPSF1Q10570 1443 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 KDM3AQ9Y4C1 1321 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 BCRP11274 1271 aa21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 MRRFQ96E11 262 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 PPANQ9NQ55 473 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-204ENST00000463837 NCBP1Q09161 790 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 EFCAB13Q8IY85 973 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 FANCBQ8NB91 859 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 TCHPQ9BT92 498 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 SH2D4AQ9H788 454 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 STK32BQ9NY57 414 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 UAP1Q16222 522 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 GNPATO15228 680 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 RNF40O75150 1001 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 COPB1P53618 953 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 SIRT2Q8IXJ6 389 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 ASIC3Q9UHC3 531 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 VTI1AQ96AJ9 217 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 FOXP1Q9H334 677 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 BAIAP2L1Q9UHR4 511 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 DNM3Q9UQ16 869 aa21.01■□□□□ 0.95
CCDC88B-204ENST00000463837 LONP1P36776 959 aaKnown RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 ZMYM1Q5SVZ6 1142 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 WDR66Q8TBY9 1149 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 ARPP21Q9UBL0 812 aaPredicted RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 PCDHA5Q9Y5H7 936 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 CFAP157Q5JU67 520 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 MYCBPQ99417 103 aaPredicted RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 HOMER3Q9NSC5 361 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 RRP15Q9Y3B9 282 aaKnown RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 RGS16O15492 202 aaPredicted RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 PCP11498 1178 aaKnown RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 SLFNL1Q499Z3 407 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 CNBD1Q8NA66 436 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms