RNA–Protein interactions for RNA: ENST00000463066.1

HLA-DPA1-245, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 580 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-245ENST00000463066 STOX1Q6ZVD7 989 aa19.72■□□□□ 0.75
HLA-DPA1-245ENST00000463066 CD99L2Q8TCZ2 262 aa19.72■□□□□ 0.75
HLA-DPA1-245ENST00000463066 NUP88Q99567 741 aaPredicted RBP19.72■□□□□ 0.75
HLA-DPA1-245ENST00000463066 CASP8AP2Q9UKL3 1982 aa19.72■□□□□ 0.75
HLA-DPA1-245ENST00000463066 OSBPP22059 807 aa19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 HOXA7P31268 230 aaPredicted RBP19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 IRX3P78415 501 aaPredicted RBP19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 NOM1Q5C9Z4 860 aaKnown RBP19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 RASGRP2Q7LDG7 609 aa19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 ZKSCAN3Q9BRR0 538 aa19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 ARHGAP39Q9C0H5 1083 aa19.71■□□□□ 0.75
HLA-DPA1-245ENST00000463066 USP17L15C9J2P7 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L13C9JLJ4 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L11C9JVI0 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L18D6R9N7 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L22D6RA61 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L17D6RBQ6 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L19D6RCP7 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L20D6RJB6 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 KDM4AO75164 1064 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 BCRP11274 1271 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CTGFP29279 349 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SP3Q02447 781 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 USP17L24Q0WX57 530 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 PABPC4Q13310 644 aaKnown RBP eCLIP19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CATSPERGQ6ZRH7 1159 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SMCR8Q8TEV9 937 aaPredicted RBP19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 RNF41Q9H4P4 317 aaPredicted RBP19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SH2D4AQ9H788 454 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 PNMA3Q9UL41 463 aa19.7■□□□□ 0.74
HLA-DPA1-245ENST00000463066 LAMA4Q16363 1823 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 TTLL1O95922 423 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 NDUFB10O96000 172 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 HERVK_113P62684 666 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 COL9A3Q14050 684 aaPredicted RBP19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CASC1Q6TDU7 716 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ANKRD13CQ8N6S4 541 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 TANGO6Q9C0B7 1094 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 TXNRD2Q9NNW7 524 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 STX8Q9UNK0 236 aa19.69■□□□□ 0.74
HLA-DPA1-245ENST00000463066 F5H6K3 240 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SLC27A2O14975 620 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 PCP11498 1178 aaKnown RBP19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 KLRC3Q07444 240 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 FAM83BQ5T0W9 1011 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SAMD1Q6SPF0 538 aaPredicted RBP19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CYB5R4Q7L1T6 521 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ESR2Q92731 530 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 MKL1Q969V6 931 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 FBXO28Q9NVF7 368 aa19.68■□□□□ 0.74
HLA-DPA1-245ENST00000463066 E7EWF7 191 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 NOVP48745 357 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CREB3L3Q68CJ9 461 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 RCSD1Q6JBY9 416 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 LPAR1Q92633 364 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 GOPCQ9HD26 462 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ZSWIM5Q9P217 1185 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 RBPJLQ9UBG7 517 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 MTMR7Q9Y216 660 aa19.67■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SPDYE16A6NNV3 312 aaPredicted RBP19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 WDR46O15213 610 aaKnown RBP19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 NECTIN1Q15223 517 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 SLFN13Q68D06 897 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 TMEM47Q9BQJ4 181 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 PAGR1Q9BTK6 254 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 TCP11L1Q9NUJ3 509 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ZSWIM8A7E2V4 1837 aa19.66■□□□□ 0.74
HLA-DPA1-245ENST00000463066 CNMDO75829 334 aa19.65■□□□□ 0.74
HLA-DPA1-245ENST00000463066 LACTBP83111 547 aaPredicted RBP19.65■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ATG4CQ96DT6 458 aa19.65■□□□□ 0.74
HLA-DPA1-245ENST00000463066 ERO1AQ96HE7 468 aa19.65■□□□□ 0.74
HLA-DPA1-245ENST00000463066 KRT23Q9C075 422 aa19.65■□□□□ 0.74
HLA-DPA1-245ENST00000463066 FLOT1O75955 427 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 GCLCP48506 637 aaPredicted RBP19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 Q3C1V9 767 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 CHST3Q7LGC8 479 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 CTU1Q7Z7A3 348 aaKnown RBP19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 GMCL1P1Q8NEA9 526 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 TRIM47Q96LD4 638 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 BTBD7Q9P203 1132 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 TRIM17Q9Y577 477 aa19.64■□□□□ 0.73
HLA-DPA1-245ENST00000463066 TOP1P11387 765 aaKnown RBP19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 MCCP23508 829 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 DSG3P32926 999 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 PSMC4P43686 418 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 ANTXR2P58335 489 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 COG2Q14746 738 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 OTOP1Q7RTM1 612 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 RASEFQ8IZ41 740 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 ZSCAN10Q96SZ4 725 aaPredicted RBP19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 MCOLN1Q9GZU1 580 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 CNNM2Q9H8M5 875 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 MORF4L1Q9UBU8 362 aa19.63■□□□□ 0.73
HLA-DPA1-245ENST00000463066 TNKSO95271 1327 aa19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 FAM110CQ1W6H9 321 aa19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 MB21D2Q8IYB1 491 aaPredicted RBP19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 ENAHQ8N8S7 591 aaPredicted RBP19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 EFCC1Q9HA90 598 aa19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 SENP2Q9HC62 589 aa19.62■□□□□ 0.73
HLA-DPA1-245ENST00000463066 GPHNQ9NQX3 736 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms