RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TRMT44Q8IYL2 757 aaKnown RBP16.72■□□□□ 0.27
USP4-206ENST00000461553 TRIB2Q92519 343 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 LPAR1Q92633 364 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 STRBPQ96SI9 672 aaKnown RBP16.72■□□□□ 0.27
USP4-206ENST00000461553 APBA2Q99767 749 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 FSD1Q9BTV5 496 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 HTATIP2Q9BUP3 242 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 ZNFX1Q9P2E3 1918 aaKnown RBP16.71■□□□□ 0.27
USP4-206ENST00000461553 CNMDO75829 334 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 GNAT2P19087 354 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 Q3C1V9 767 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 GIMAP6Q6P9H5 292 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 PI4K2BQ8TCG2 481 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 OSBP2Q969R2 916 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 IVNS1ABPQ9Y6Y0 642 aa16.71■□□□□ 0.27
USP4-206ENST00000461553 RPTORQ8N122 1335 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 PLXNA1Q9UIW2 1896 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 SMIM22K7EJ46 135 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 TFRCP02786 760 aaKnown RBP16.7■□□□□ 0.26
USP4-206ENST00000461553 XRCC5P13010 732 aaKnown RBP16.7■□□□□ 0.26
USP4-206ENST00000461553 TDO2P48775 406 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 SBK1Q52WX2 424 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 POTEEQ6S8J3 1075 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 OTUD7AQ8TE49 926 aaPredicted RBP16.7■□□□□ 0.26
USP4-206ENST00000461553 VCPKMTQ9H867 229 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 HMX1Q9NP08 348 aaPredicted RBP16.7■□□□□ 0.26
USP4-206ENST00000461553 TMX2Q9Y320 296 aa16.7■□□□□ 0.26
USP4-206ENST00000461553 TRIOBPQ9H2D6 2365 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 GSG1L2A8MUP6 293 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 M0R2C6 588 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 WDR46O15213 610 aaKnown RBP16.69■□□□□ 0.26
USP4-206ENST00000461553 FLOT1O75955 427 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 PRKAR2AP13861 404 aaKnown RBP16.69■□□□□ 0.26
USP4-206ENST00000461553 ATP2B2Q01814 1243 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 TRIM32Q13049 653 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 COG2Q14746 738 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 MORN1Q5T089 497 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 UBE2Q1Q7Z7E8 422 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 SPICE1Q8N0Z3 855 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 DPF3Q92784 378 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 KANSL2Q9H9L4 492 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 GOPCQ9HD26 462 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 BTBD7Q9P203 1132 aa16.69■□□□□ 0.26
USP4-206ENST00000461553 MINDY4BA8MYZ0 360 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 APPP05067 770 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 MAP2K5Q13163 448 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 MB21D1Q8N884 522 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 USP6NLQ92738 828 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 CRISPLD2Q9H0B8 497 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 EPB41L4AQ9HCS5 686 aaPredicted RBP16.68■□□□□ 0.26
USP4-206ENST00000461553 HOXC10Q9NYD6 342 aa16.68■□□□□ 0.26
USP4-206ENST00000461553 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
USP4-206ENST00000461553 HDAC1Q13547 482 aaPredicted RBP16.67■□□□□ 0.26
USP4-206ENST00000461553 AAMPQ13685 434 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 KIAA1755Q5JYT7 1200 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 MAP3K21Q5TCX8 1036 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 ANKRD45Q5TZF3 282 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 STK11IPQ8N1F8 1099 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 NACAP1Q9BZK3 213 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 MKNK2Q9HBH9 465 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 ZNF287Q9HBT7 754 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 SALL3Q9BXA9 1300 aa16.67■□□□□ 0.26
USP4-206ENST00000461553 SLC15A5A6NIM6 579 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 RAD21O60216 631 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 RASA1P20936 1047 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 PTPREP23469 700 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 GRB14Q14449 540 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 SAMD1Q6SPF0 538 aaPredicted RBP16.66■□□□□ 0.26
USP4-206ENST00000461553 ANKLE1Q8NAG6 615 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 SPATC1LQ9H0A9 340 aa16.66■□□□□ 0.26
USP4-206ENST00000461553 H0YGN5 161 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 DSG3P32926 999 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 PLS1Q14651 629 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 CCL14Q16627 93 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 ZMYM1Q5SVZ6 1142 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 SIAH1Q8IUQ4 282 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 SHCBP1Q8NEM2 672 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 ATG4CQ96DT6 458 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 MOV10L1Q9BXT6 1211 aaKnown RBP16.65■□□□□ 0.26
USP4-206ENST00000461553 NAPBQ9H115 298 aa16.65■□□□□ 0.26
USP4-206ENST00000461553 PATL2C9JE40 543 aaKnown RBP16.64■□□□□ 0.25
USP4-206ENST00000461553 CACNB2Q08289 660 aaPredicted RBP16.64■□□□□ 0.25
USP4-206ENST00000461553 MFSD14CQ5VZR4 134 aa16.64■□□□□ 0.25
USP4-206ENST00000461553 NECAB2Q7Z6G3 386 aa16.64■□□□□ 0.25
USP4-206ENST00000461553 IFNL3Q8IZI9 196 aa16.64■□□□□ 0.25
USP4-206ENST00000461553 DIS3LQ8TF46 1054 aaKnown RBP16.64■□□□□ 0.25
USP4-206ENST00000461553 SEC62Q99442 399 aaKnown RBP16.64■□□□□ 0.25
USP4-206ENST00000461553 NR2E3Q9Y5X4 410 aa16.64■□□□□ 0.25
USP4-206ENST00000461553 PLIN4Q96Q06 1357 aa16.64■□□□□ 0.25
USP4-206ENST00000461553 SLC3A2P08195 630 aaKnown RBP16.63■□□□□ 0.25
USP4-206ENST00000461553 HOXC6P09630 235 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 ERCC3P19447 782 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 PDE4BQ07343 736 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 HABP4Q5JVS0 413 aaKnown RBP16.63■□□□□ 0.25
USP4-206ENST00000461553 NCAPG2Q86XI2 1143 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 ZNF444Q8N0Y2 327 aaPredicted RBP16.63■□□□□ 0.25
USP4-206ENST00000461553 EVI5LQ96CN4 794 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 PAWRQ96IZ0 340 aaKnown RBP16.63■□□□□ 0.25
USP4-206ENST00000461553 LAMA4Q16363 1823 aa16.63■□□□□ 0.25
USP4-206ENST00000461553 STRNO43815 780 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms