RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 FAM160A1Q05DH4 1040 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 GRM4Q14833 912 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 MAP3K11Q16584 847 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 APOBEC3HQ6NTF7 200 aaKnown RBP12.56□□□□□ -0.4
IFT88-204ENST00000461115 STK11IPQ8N1F8 1099 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 CTCFLQ8NI51 663 aaPredicted RBP12.56□□□□□ -0.4
IFT88-204ENST00000461115 NUP133Q8WUM0 1156 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 SHISA4Q96DD7 197 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 DYNLL2Q96FJ2 89 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 VPS33BQ9H267 617 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 CLIC4Q9Y696 253 aa12.56□□□□□ -0.4
IFT88-204ENST00000461115 COL2A1P02458 1487 aaPredicted RBP12.56□□□□□ -0.4
IFT88-204ENST00000461115 IGKV6D-41A0A0C4DH26 115 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 NMT2O60551 498 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 GNAQP50148 359 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 FOSBP53539 338 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 SAFBQ15424 915 aaKnown RBP eCLIP12.55□□□□□ -0.4
IFT88-204ENST00000461115 NPY5RQ15761 445 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 RILPL1Q5EBL4 403 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 DPY19L2Q6NUT2 758 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 CCDC125Q86Z20 511 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 FMR1NBQ8N0W7 255 aaPredicted RBP12.55□□□□□ -0.4
IFT88-204ENST00000461115 ZNF444Q8N0Y2 327 aaPredicted RBP12.55□□□□□ -0.4
IFT88-204ENST00000461115 SRBD1Q8N5C6 995 aaKnown RBP12.55□□□□□ -0.4
IFT88-204ENST00000461115 TNFRSF25Q93038 417 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 TEKT1Q969V4 418 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 PSMD1Q99460 953 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 IDI2Q9BXS1 227 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 EHD4Q9H223 541 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 MKNK2Q9HBH9 465 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 TTF2Q9UNY4 1162 aaKnown RBP12.55□□□□□ -0.4
IFT88-204ENST00000461115 BOLA1Q9Y3E2 137 aa12.55□□□□□ -0.4
IFT88-204ENST00000461115 PALM3A6NDB9 673 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 PLEKHA8P1O95397 391 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CAVIN2O95810 425 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 XBP1P17861 261 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CMA1P23946 247 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CHRNA5P30532 468 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 STK38Q15208 465 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 PFKFB3Q16875 520 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 DOK7Q18PE1 504 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CCAR1Q8IX12 1150 aaKnown RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 DIS3L2Q8IYB7 885 aaKnown RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 PNMA1Q8ND90 353 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 BICD2Q8TD16 824 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 MRPS27Q92552 414 aaKnown RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 LZTS2Q9BRK4 669 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 GOLPH3LQ9H4A5 285 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 SH3GLB2Q9NR46 395 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 SWAP70Q9UH65 585 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 HPSEQ9Y251 543 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 BTBD18B2RXH4 712 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 ECE2O60344 883 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CCDC192P0DO97 292 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 TOB1P50616 345 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 SF3A1Q15459 793 aaKnown RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 HS1BP3Q53T59 392 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 CDC42EP5Q6NZY7 148 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 METTL16Q86W50 562 aaKnown RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 ELOA2Q8IYF1 753 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 JMYQ8N9B5 988 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 TIGD1Q96MW7 591 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 TMEM47Q9BQJ4 181 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 OSBPL5Q9H0X9 879 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 TNMDQ9H2S6 317 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 KAT14Q9H8E8 782 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 SERPINA10Q9UK55 444 aa12.54□□□□□ -0.4
IFT88-204ENST00000461115 V9GY48 417 aaPredicted RBP12.54□□□□□ -0.4
IFT88-204ENST00000461115 FER1L6Q2WGJ9 1857 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 MYH4Q9Y623 1939 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 USP17L3A6NCW0 530 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 USP17L4A6NCW7 530 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 TSPY3P0CV98 308 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 TSPY8P0CW00 308 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 SCG2P13521 617 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 KCNA3P22001 575 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 CRKP46108 304 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 ME1P48163 572 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 AKAP17AQ02040 695 aaKnown RBP12.53□□□□□ -0.4
IFT88-204ENST00000461115 SF3B2Q13435 895 aaKnown RBP12.53□□□□□ -0.4
IFT88-204ENST00000461115 CCDC73Q6ZRK6 1079 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 USP17L1Q7RTZ2 530 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 RTKN2Q8IZC4 609 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 CMTR1Q8N1G2 835 aaKnown RBP12.53□□□□□ -0.4
IFT88-204ENST00000461115 SLC44A5Q8NCS7 719 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 SPZ1Q9BXG8 430 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 DBNDD1Q9H9R9 158 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 DDX4Q9NQI0 724 aaKnown RBP12.53□□□□□ -0.4
IFT88-204ENST00000461115 MAD2L2Q9UI95 211 aa12.53□□□□□ -0.4
IFT88-204ENST00000461115 CUTAO60888 179 aa12.52□□□□□ -0.41
IFT88-204ENST00000461115 SNHG28P0DPA3 235 aa12.52□□□□□ -0.41
IFT88-204ENST00000461115 TOP1P11387 765 aaKnown RBP12.52□□□□□ -0.41
IFT88-204ENST00000461115 CEBPZQ03701 1054 aaKnown RBP12.52□□□□□ -0.41
IFT88-204ENST00000461115 TTLL6Q8N841 843 aa12.52□□□□□ -0.41
IFT88-204ENST00000461115 DAGLBQ8NCG7 672 aa12.52□□□□□ -0.41
IFT88-204ENST00000461115 ANP32BQ92688 251 aaKnown RBP12.52□□□□□ -0.41
IFT88-204ENST00000461115 DHX36Q9H2U1 1008 aaKnown RBP12.52□□□□□ -0.41
IFT88-204ENST00000461115 USP40Q9NVE5 1235 aa12.52□□□□□ -0.41
IFT88-204ENST00000461115 SAP30BPQ9UHR5 308 aaKnown RBP12.52□□□□□ -0.41
IFT88-204ENST00000461115 KCNJ14Q9UNX9 436 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms