RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ISY1Q9ULR0 285 aaKnown RBP22.22■■□□□ 1.15
USP39-209ENST00000458268 GABRQQ9UN88 632 aa22.22■■□□□ 1.15
USP39-209ENST00000458268 GREB1LQ9C091 1923 aaPredicted RBP22.21■■□□□ 1.15
USP39-209ENST00000458268 DOCK3Q8IZD9 2030 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 GNRH1P01148 92 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 MFAP1P55081 439 aaKnown RBP22.21■■□□□ 1.15
USP39-209ENST00000458268 RRP12Q5JTH9 1297 aaKnown RBP22.21■■□□□ 1.15
USP39-209ENST00000458268 KIAA1755Q5JYT7 1200 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 CATSPERGQ6ZRH7 1159 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 COA7Q96BR5 231 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 CHMP4CQ96CF2 233 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 VCPKMTQ9H867 229 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 TXNRD2Q9NNW7 524 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 INCENPQ9NQS7 918 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 TMX2Q9Y320 296 aa22.21■■□□□ 1.15
USP39-209ENST00000458268 HIP1O00291 1037 aa22.2■■□□□ 1.14
USP39-209ENST00000458268 HSPD1P10809 573 aaKnown RBP22.2■■□□□ 1.14
USP39-209ENST00000458268 SIAH1Q8IUQ4 282 aa22.2■■□□□ 1.14
USP39-209ENST00000458268 GPRC5AQ8NFJ5 357 aa22.2■■□□□ 1.14
USP39-209ENST00000458268 GOPCQ9HD26 462 aa22.2■■□□□ 1.14
USP39-209ENST00000458268 FLOT1O75955 427 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 FGAP02671 866 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 PRMT2P55345 433 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 TFAP4Q01664 338 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 NBPF11Q86T75 865 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 SKAP1Q86WV1 359 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.19■■□□□ 1.14
USP39-209ENST00000458268 RBPJLQ9UBG7 517 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 CLIP2Q9UDT6 1046 aa22.19■■□□□ 1.14
USP39-209ENST00000458268 TSPY2A6NKD2 308 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 RANBP6O60518 1105 aaKnown RBP22.18■■□□□ 1.14
USP39-209ENST00000458268 FLT3LGP49771 235 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 ERVK-9P63128 1117 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 ERVK-24P63145 666 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 LRRC47Q8N1G4 583 aaKnown RBP22.18■■□□□ 1.14
USP39-209ENST00000458268 CEP95Q96GE4 821 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 MORF4L1Q9UBU8 362 aa22.18■■□□□ 1.14
USP39-209ENST00000458268 SPDYE16A6NNV3 312 aaPredicted RBP22.17■■□□□ 1.14
USP39-209ENST00000458268 Q3C1V9 767 aa22.17■■□□□ 1.14
USP39-209ENST00000458268 FAM83BQ5T0W9 1011 aa22.17■■□□□ 1.14
USP39-209ENST00000458268 GTF3C2Q8WUA4 911 aaPredicted RBP22.17■■□□□ 1.14
USP39-209ENST00000458268 LPAR1Q92633 364 aa22.17■■□□□ 1.14
USP39-209ENST00000458268 NUP88Q99567 741 aaPredicted RBP22.17■■□□□ 1.14
USP39-209ENST00000458268 MTMR7Q9Y216 660 aa22.17■■□□□ 1.14
USP39-209ENST00000458268 ELNP15502 786 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 GRK4P32298 578 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 PLS1Q14651 629 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 CENPQQ7L2Z9 268 aaPredicted RBP22.16■■□□□ 1.14
USP39-209ENST00000458268 TICAM2Q86XR7 235 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 CCDC136Q96JN2 1154 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 PORCNQ9H237 461 aa22.16■■□□□ 1.14
USP39-209ENST00000458268 WDR46O15213 610 aaKnown RBP22.15■■□□□ 1.14
USP39-209ENST00000458268 ADCY3O60266 1144 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 COG2Q14746 738 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 ALX1Q15699 326 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 ATG4CQ96DT6 458 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 TMEM106CQ9BVX2 250 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 FBXO28Q9NVF7 368 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 BTBD7Q9P203 1132 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 RABGAP1Q9Y3P9 1069 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 TACC3Q9Y6A5 838 aa22.15■■□□□ 1.14
USP39-209ENST00000458268 CNMDO75829 334 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 NEDD1Q8NHV4 660 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 ARMC5Q96C12 935 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 ZNF333Q96JL9 665 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 NYAP2Q9P242 653 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 STX8Q9UNK0 236 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.14■■□□□ 1.13
USP39-209ENST00000458268 COL11A1P12107 1806 aaPredicted RBP22.14■■□□□ 1.13
USP39-209ENST00000458268 PARP14Q460N5 1801 aa22.14■■□□□ 1.13
USP39-209ENST00000458268 LAMA4Q16363 1823 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 NMT2O60551 498 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 TTLL1O95922 423 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 CYP2B6P20813 491 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 CCNA1P78396 465 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 POTEEQ6S8J3 1075 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 MTMR4Q9NYA4 1195 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 HOXC10Q9NYD6 342 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 ANAPC4Q9UJX5 808 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 RLFQ13129 1914 aa22.13■■□□□ 1.13
USP39-209ENST00000458268 IGKV6D-41A0A0C4DH26 115 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 POTEFA5A3E0 1075 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 F5H6K3 240 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 NDUFB10O96000 172 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 MAPK4P31152 587 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 DSG3P32926 999 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 KLRC3Q07444 240 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 SLAIN1Q8ND83 568 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 IL25Q9H293 177 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 PLXNB2O15031 1838 aa22.12■■□□□ 1.13
USP39-209ENST00000458268 ZMYM6O95789 1325 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 ZNF213O14771 459 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 SLC4A3P48751 1232 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 UBXN2AP68543 259 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 MLLT1Q03111 559 aaPredicted RBP22.11■■□□□ 1.13
USP39-209ENST00000458268 MTFR1Q15390 333 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 MFSD6Q6ZSS7 791 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 GPR142Q7Z601 462 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 PLEKHH3Q7Z736 793 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 TBC1D10CQ8IV04 446 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms