RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 A0A1W2PRG0 241 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 CTDNEP1O95476 244 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 ANKRD1Q15327 319 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 IFIT1BQ5T764 474 aaKnown RBP12.88□□□□□ -0.35
SCN9A-205ENST00000454569 ZKSCAN4Q969J2 545 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-205ENST00000454569 CCDC17Q96LX7 622 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 CLIP2Q9UDT6 1046 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 ZNF112Q9UJU3 913 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 STX8Q9UNK0 236 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 PPP2R3BQ9Y5P8 575 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 SMCHD1A6NHR9 2005 aa12.88□□□□□ -0.35
SCN9A-205ENST00000454569 PTPRFP10586 1907 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 PFKFB2O60825 505 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 MCM2P49736 904 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 RAB3GAP1Q15042 981 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 NFXL1Q6ZNB6 911 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 DGKHQ86XP1 1220 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 ZNF654Q8IZM8 581 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 ACER1Q8TDN7 264 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 ZNF274Q96GC6 653 aaPredicted RBP12.87□□□□□ -0.35
SCN9A-205ENST00000454569 MTA3Q9BTC8 594 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 ZBTB21Q9ULJ3 1066 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 MTMR7Q9Y216 660 aa12.87□□□□□ -0.35
SCN9A-205ENST00000454569 ERICH2A1L162 156 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 CCDC69A6NI79 296 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 GOLGA8BA8MQT2 603 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 EEF2P13639 858 aaKnown RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ADD1P35611 737 aaKnown RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ECE1P42892 770 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 TROAPQ12815 778 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 BECN1Q14457 450 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 KIAA1755Q5JYT7 1200 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 CDC37L1Q7L3B6 337 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 MICU3Q86XE3 530 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 CMTR1Q8N1G2 835 aaKnown RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 LRRC47Q8N1G4 583 aaKnown RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 KCNV2Q8TDN2 545 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 GTF3C6Q969F1 213 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 KLRG1Q96E93 195 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ZSCAN31Q96LW9 406 aaPredicted RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ZNF341Q9BYN7 854 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 UBE2Q2LH0YL09 131 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 JAK2O60674 1132 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ATP2B2Q01814 1243 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 DGKZQ13574 1117 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 SART3Q15020 963 aaKnown RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 SLC35G1Q2M3R5 365 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 TMEM179Q6ZVK1 233 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 PNMA1Q8ND90 353 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 NUP133Q8WUM0 1156 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 WRNIP1Q96S55 665 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 SLKQ9H2G2 1235 aaPredicted RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 DAXXQ9UER7 740 aaPredicted RBP12.86□□□□□ -0.35
SCN9A-205ENST00000454569 SLC12A7Q9Y666 1083 aa12.86□□□□□ -0.35
SCN9A-205ENST00000454569 ZBTB43O43298 467 aa12.85□□□□□ -0.35
SCN9A-205ENST00000454569 SUPT20HL1Q3ZLR7 823 aa12.85□□□□□ -0.35
SCN9A-205ENST00000454569 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.85□□□□□ -0.35
SCN9A-205ENST00000454569 NBPF11Q86T75 865 aa12.85□□□□□ -0.35
SCN9A-205ENST00000454569 LDHDQ86WU2 507 aa12.85□□□□□ -0.35
SCN9A-205ENST00000454569 STAG2Q8N3U4 1231 aa12.85□□□□□ -0.35
SCN9A-205ENST00000454569 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.85□□□□□ -0.35
SCN9A-205ENST00000454569 SH2B1Q9NRF2 756 aaPredicted RBP12.85□□□□□ -0.35
SCN9A-205ENST00000454569 USP17L5A8MUK1 530 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 KIF3CO14782 793 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 CTNND1O60716 968 aaKnown RBP12.84□□□□□ -0.35
SCN9A-205ENST00000454569 PLEKHA8P1O95397 391 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 TTLL1O95922 423 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 ITGBL1O95965 494 aaPredicted RBP12.84□□□□□ -0.35
SCN9A-205ENST00000454569 GOLGA8HP0CJ92 632 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 TOP1P11387 765 aaKnown RBP12.84□□□□□ -0.35
SCN9A-205ENST00000454569 ICA1Q05084 483 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 NTRK3Q16288 839 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 DCAF15Q66K64 600 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 TMTC2Q8N394 836 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 MKL1Q969V6 931 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 CLMNQ96JQ2 1002 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 PHF12Q96QT6 1004 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 CPVLQ9H3G5 476 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 KAT14Q9H8E8 782 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 KANSL2Q9H9L4 492 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 CABP5Q9NP86 173 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 NYAP2Q9P242 653 aa12.84□□□□□ -0.35
SCN9A-205ENST00000454569 GOLGA8AA7E2F4 631 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 FDPSP14324 419 aaKnown RBP12.83□□□□□ -0.36
SCN9A-205ENST00000454569 CD44P16070 742 aaKnown RBP12.83□□□□□ -0.36
SCN9A-205ENST00000454569 NT5C2P49902 561 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 METAP2P50579 478 aaKnown RBP eCLIP12.83□□□□□ -0.36
SCN9A-205ENST00000454569 USP17L2Q6R6M4 530 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 CCDC82Q8N4S0 544 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 FANCBQ8NB91 859 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 NSUN7Q8NE18 718 aaKnown RBP12.83□□□□□ -0.36
SCN9A-205ENST00000454569 IL27Q8NEV9 243 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 ZNF408Q9H9D4 720 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 MAD2L2Q9UI95 211 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 NID2Q14112 1375 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 PARP14Q460N5 1801 aa12.83□□□□□ -0.36
SCN9A-205ENST00000454569 PTPRAP18433 802 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 DDIT3P35638 169 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 FUT2Q10981 343 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 VGLL4Q14135 290 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms