RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 IFT88Q13099 833 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 ITIH4Q14624 930 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 TWISTNBQ3B726 338 aaPredicted RBP2.44□□□□□ -2.02
USP53-202ENST00000450251 C6orf118Q5T5N4 469 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 SND1Q7KZF4 910 aaKnown RBP eCLIP2.44□□□□□ -2.02
USP53-202ENST00000450251 PPP1R42Q7Z4L9 355 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 AGGF1Q8N302 714 aaeCLIP2.44□□□□□ -2.02
USP53-202ENST00000450251 ATP11CQ8NB49 1132 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 UBLCP1Q8WVY7 318 aaPredicted RBP2.44□□□□□ -2.02
USP53-202ENST00000450251 EVI5LQ96CN4 794 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 SGSM3Q96HU1 749 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 GORASP1Q9BQQ3 440 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 RIOK1Q9BRS2 568 aaKnown RBP2.44□□□□□ -2.02
USP53-202ENST00000450251 DIABLOQ9NR28 239 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 TBC1D2BQ9UPU7 963 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 TMED5Q9Y3A6 229 aa2.44□□□□□ -2.02
USP53-202ENST00000450251 MCF2LO15068 1137 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ARHGEF9O43307 516 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CAND2O75155 1236 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 TADA3O75528 432 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 KRT18P05783 430 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 VIL1P09327 827 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 RFC1P35251 1148 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 RPS6KA3P51812 740 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 KRR1Q13601 381 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 SYCP2LQ5T4T6 812 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 SPATA1Q5VX52 437 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 DENND2CQ68D51 928 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 NLRP14Q86W24 1093 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 AFAP1Q8N556 730 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 RAPGEF4Q8WZA2 1011 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ARHGEF2Q92974 986 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 NRBF2Q96F24 287 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 C8orf76Q96K31 380 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CCDC138Q96M89 665 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 NOX5Q96PH1 765 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 KIFC3Q9BVG8 833 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 TM6SF1Q9BZW5 370 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 KDM4CQ9H3R0 1056 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 L2HGDHQ9H9P8 463 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ATXN10Q9UBB4 475 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ANKRD62A6NC57 917 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 BIRC5O15392 142 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 SEC31AO94979 1220 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 HSPA13P48723 471 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CTCFP49711 727 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 ARPC4P59998 168 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CEBPZQ03701 1054 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 ZBTB16Q05516 673 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 NONOQ15233 471 aaKnown RBP eCLIP2.43□□□□□ -2.02
USP53-202ENST00000450251 E2F5Q15329 346 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CCDC122Q5T0U0 273 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CWF19L1Q69YN2 538 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 UBE2Q1Q7Z7E8 422 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ARHGEF25Q86VW2 580 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 PASD1Q8IV76 773 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 VPS52Q8N1B4 723 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 SAMD3Q8N6K7 520 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ENOX1Q8TC92 643 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 ATP2A3Q93084 1043 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 UBAC1Q9BSL1 405 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CNGB3Q9NQW8 809 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 RRP7AQ9Y3A4 280 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 C9orf84Q5VXU9 1444 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 TRAPPC8Q9Y2L5 1435 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 GRID2IPA4D2P6 1211 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 WFS1O76024 890 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 KRT5P13647 590 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ATP5JP18859 108 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ACADVLP49748 655 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 HDGFP51858 240 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 PLCB3Q01970 1234 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 DNM1Q05193 864 aaKnown RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 CUL4AQ13619 759 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 PACS2Q86VP3 889 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 C17orf53Q8N3J3 647 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 BBOF1Q8ND07 529 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 TRPC4APQ8TEL6 797 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 DDI1Q8WTU0 396 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 CHMP7Q8WUX9 453 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 CFAP36Q96G28 342 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 FAM81BQ96LP2 452 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.43□□□□□ -2.02
USP53-202ENST00000450251 TMEM60Q9H2L4 133 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 FAM96AQ9H5X1 160 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 SLC40A1Q9NP59 571 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 DMAP1Q9NPF5 467 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 ATP8A1Q9Y2Q0 1164 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 FHOD1Q9Y613 1164 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 E9PCH4 1651 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 A0A1B0GW55 424 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 POTEB3A0JP26 581 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 GMNCA6NCL1 334 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 GOLGA8CPA6NN73 597 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 TRIM66O15016 1216 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 SEMA3EO15041 775 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 N4BP3O15049 544 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 MARCH6O60337 910 aa2.43□□□□□ -2.02
USP53-202ENST00000450251 ZNF189O75820 626 aaPredicted RBP2.43□□□□□ -2.02
USP53-202ENST00000450251 DUX4L2P0CJ85 424 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms