RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 ANKRD34AQ69YU3 496 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 KIAA1211Q6ZU35 1233 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 ANKRD24Q8TF21 1146 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 SETDB2Q96T68 719 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 USP47Q96K76 1375 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 ADGRB1O14514 1584 aa8.18□□□□□ -1.1
USP49-205ENST00000448078 PHRF1Q9P1Y6 1649 aaKnown RBP8.18□□□□□ -1.1
USP49-205ENST00000448078 DHX15O43143 795 aaKnown RBP8.17□□□□□ -1.1
USP49-205ENST00000448078 XRCC5P13010 732 aaKnown RBP8.17□□□□□ -1.1
USP49-205ENST00000448078 ITPKAP23677 461 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 GSTT1P30711 240 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 USP11P51784 963 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 ARHGAP27Q6ZUM4 889 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 ZCRB1Q8TBF4 217 aaKnown RBP8.17□□□□□ -1.1
USP49-205ENST00000448078 ZC3H12CQ9C0D7 883 aaKnown RBP8.17□□□□□ -1.1
USP49-205ENST00000448078 CPSF1Q10570 1443 aaKnown RBP8.17□□□□□ -1.1
USP49-205ENST00000448078 TNS2Q63HR2 1409 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 LMO7Q8WWI1 1683 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 PEAK1Q9H792 1746 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 SBF2Q86WG5 1849 aa8.17□□□□□ -1.1
USP49-205ENST00000448078 LOC100289279A0A1B0GTE1 492 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 PTPN12Q05209 780 aaKnown RBP8.16□□□□□ -1.1
USP49-205ENST00000448078 HDGFL2Q7Z4V5 671 aaPredicted RBP8.16□□□□□ -1.1
USP49-205ENST00000448078 KDM2BQ8NHM5 1336 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 SMARCC1Q92922 1105 aaPredicted RBP8.16□□□□□ -1.1
USP49-205ENST00000448078 BCL11AQ9H165 835 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 CBX8Q9HC52 389 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 TMEM39AQ9NV64 488 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 CRYBG1Q9Y4K1 1723 aa8.16□□□□□ -1.1
USP49-205ENST00000448078 IGSF1Q8N6C5 1336 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 B3GALT4O96024 378 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 AP3B2Q13367 1082 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 RSPO4Q2I0M5 234 aaPredicted RBP8.15□□□□□ -1.1
USP49-205ENST00000448078 RPS26P11Q5JNZ5 115 aaPredicted RBP8.15□□□□□ -1.1
USP49-205ENST00000448078 AKAP4Q5JQC9 854 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 EXOSC6Q5RKV6 272 aaKnown RBP8.15□□□□□ -1.1
USP49-205ENST00000448078 TPTE2Q6XPS3 522 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP49-205ENST00000448078 JMYQ8N9B5 988 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 LTV1Q96GA3 475 aaPredicted RBP8.15□□□□□ -1.1
USP49-205ENST00000448078 SRCIN1Q9C0H9 1055 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 AP4E1Q9UPM8 1137 aa8.15□□□□□ -1.1
USP49-205ENST00000448078 KTN1Q86UP2 1357 aaKnown RBP8.14□□□□□ -1.11
USP49-205ENST00000448078 GIPC1O14908 333 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 DYRK3O43781 588 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 ADAM23O75077 832 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 EIF4BP23588 611 aaKnown RBP8.14□□□□□ -1.11
USP49-205ENST00000448078 TGFB2P61812 414 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 TMCO4Q5TGY1 634 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 RAPGEF4Q8WZA2 1011 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 KCNB2Q92953 911 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 UBL7Q96S82 380 aaPredicted RBP8.14□□□□□ -1.11
USP49-205ENST00000448078 MRS2Q9HD23 443 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 TERF2IPQ9NYB0 399 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 STOML1Q9UBI4 398 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 TTF2Q9UNY4 1162 aaKnown RBP8.14□□□□□ -1.11
USP49-205ENST00000448078 SAMM50Q9Y512 469 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 LRRC37A3O60309 1634 aa8.14□□□□□ -1.11
USP49-205ENST00000448078 NSD3Q9BZ95 1437 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 ANKRD36BQ8N2N9 1353 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 CGNL1Q0VF96 1302 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 SHANK3Q9BYB0 1731 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 PRPF40AO75400 957 aaKnown RBP8.13□□□□□ -1.11
USP49-205ENST00000448078 BMP3P12645 472 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 AMPHP49418 695 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 UVSSAQ2YD98 709 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 SMC1BQ8NDV3 1235 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 GLIS3Q8NEA6 775 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 IP6K1Q92551 441 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 DUSP9Q99956 384 aaKnown RBP8.13□□□□□ -1.11
USP49-205ENST00000448078 YIPF2Q9BWQ6 316 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 FAM8A1Q9UBU6 413 aa8.13□□□□□ -1.11
USP49-205ENST00000448078 AKAP12Q02952 1782 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 ADCY9O60503 1353 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 GOLGB1Q14789 3259 aaKnown RBP8.12□□□□□ -1.11
USP49-205ENST00000448078 FBXO24O75426 580 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 H2AFB1P0C5Y9 115 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 H2AFB2P0C5Z0 115 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 USP17L7P0C7H9 530 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 LMNB1P20700 586 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 PREPP48147 710 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 PSMD2Q13200 908 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 NKAPLQ5M9Q1 402 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 PRR23CQ6ZRP0 262 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 DYMQ7RTS9 669 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 DZIP1LQ8IYY4 767 aaKnown RBP8.12□□□□□ -1.11
USP49-205ENST00000448078 NLGN1Q8N2Q7 840 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 FRMD6Q96NE9 622 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 CEP44Q9C0F1 390 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 C12orf49Q9H741 205 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 RAXQ9Y2V3 346 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 SLIT3O75094 1523 aa8.12□□□□□ -1.11
USP49-205ENST00000448078 DRD2P14416 443 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 GNA15P30679 374 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 FAAP100Q0VG06 881 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 MPRIPQ6WCQ1 1025 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 SULF2Q8IWU5 870 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 SSBP4Q9BWG4 385 aaPredicted RBP8.11□□□□□ -1.11
USP49-205ENST00000448078 OSBPL7Q9BZF2 842 aa8.11□□□□□ -1.11
USP49-205ENST00000448078 TOPAZ1Q8N9V7 1692 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms