RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SERPINB3P29508 390 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 RECQLP46063 649 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIM32Q13049 653 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 SIM2Q14190 667 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC93Q567U6 631 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 POTEAQ6S8J7 498 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 NSMFQ6X4W1 530 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 BRAPQ7Z569 592 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 ADAT2Q7Z6V5 191 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 GJA10Q969M2 543 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 WNK4Q96J92 1243 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 CSRNP2Q9H175 543 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 KLHL3Q9UH77 587 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 ZKSCAN5Q9Y2L8 839 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 NEMP1O14524 444 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 PRODHO43272 600 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 ZEB2O60315 1214 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 CTNND1O60716 968 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 NPTXRO95502 500 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 PSAPP07602 524 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 IREB2P48200 963 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 ACAP2Q15057 778 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 HYIQ5T013 277 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 KANK3Q6NY19 840 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 UNC5AQ6ZN44 842 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TOGARAM2Q6ZUX3 1019 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 NLRP8Q86W28 1048 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRN4CLQ8ND94 238 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TMEM40Q8WWA1 233 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 ERP27Q96DN0 273 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRC27Q9C0I9 530 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 IFT122Q9HBG6 1241 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 DZANK1Q9NVP4 752 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 CYP8B1Q9UNU6 501 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 PDZRN3Q9UPQ7 1066 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 METTL12A8MUP2 240 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PQBP1O60828 265 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CILPO75339 1184 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 SASH3O75995 380 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 VCAM1P19320 739 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 NR5A1Q13285 461 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GRB10Q13322 594 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF460Q14592 562 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GPR158Q5T848 1215 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 YOD1Q5VVQ6 348 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CCNJLQ8IV13 435 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIM8Q9BZR9 551 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF395Q9H8N7 513 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ARFGAP3Q9NP61 516 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 NMRK2Q9NPI5 230 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF652Q9Y2D9 606 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 DGKBQ9Y6T7 804 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM221AA4D161 298 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIM75PA6NK02 468 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 NOP56O00567 594 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GAS7O60861 476 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TRPA1O75762 1119 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 RARAP10276 462 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 IGFALSP35858 605 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 IARSP41252 1262 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ID4P47928 161 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 RPL6Q02878 288 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 HYAL2Q12891 473 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC96Q2M329 555 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PEAR1Q5VY43 1037 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PPP4R3AQ6IN85 833 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 XRRA1Q6P2D8 792 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC149Q6ZUS6 474 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PODNQ7Z5L7 613 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 HSPBAP1Q96EW2 488 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 FUBP3Q96I24 572 aaKnown RBP eCLIP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ZKSCAN3Q9BRR0 538 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 EMILIN2Q9BXX0 1053 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ZDHHC3Q9NYG2 299 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 IPPQ9Y573 584 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 A0A096LPE4 126 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 A0A1W2PPZ6 126 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 EFCAB14O75071 495 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 MAP3K6O95382 1288 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ASLP04424 464 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TP53P04637 393 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PLCG1P19174 1290 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 POLD1P28340 1107 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GRIA4P48058 902 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GTF2H3Q13889 308 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 BBS9Q3SYG4 887 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PIK3R6Q5UE93 754 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 SULF2Q8IWU5 870 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TTC30BQ8N4P2 665 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 LTV1Q96GA3 475 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 AHCYL2Q96HN2 611 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC138Q96M89 665 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 AGBL1Q96MI9 1066 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 FHDC1Q9C0D6 1143 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM204AQ9H8W3 233 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 EFCC1Q9HA90 598 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX20Q9UHI6 824 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 B4E1Z4 1266 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 SNX2O60749 519 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 DNAJC8O75937 253 aaPredicted RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms