RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TCP11Q8WWU5 503 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 GOLGA1Q92805 767 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 FAM81BQ96LP2 452 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 TRIM7Q9C029 511 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 TNMDQ9H2S6 317 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 HOMER3Q9NSC5 361 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 FAM53CQ9NYF3 392 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ADAMTS8Q9UP79 889 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 RIPOR2Q9Y4F9 1068 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ASXL1Q8IXJ9 1541 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SPTA1P02549 2419 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SSH2Q76I76 1423 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 YTHDC2Q9H6S0 1430 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 QSER1Q2KHR3 1735 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 KIDINS220Q9ULH0 1771 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 NBPF26B4DH59 902 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MYO1BO43795 1136 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ATP2C2O75185 946 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 BRD1O95696 1058 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 NBPF7P0C2Y1 421 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 CNGA1P29973 690 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 HOXC9P31274 260 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 KIF5BP33176 963 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 PAPOLAP51003 745 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 SCNN1BP51168 640 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 UBE2HP62256 183 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SFSWAPQ12872 951 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 IQCB1Q15051 598 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SLC5A9Q2M3M2 681 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 RCSD1Q6JBY9 416 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 CCDC121Q6ZUS5 278 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 CKAP2LQ8IYA6 745 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 CEP57L1Q8IYX8 460 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 FLAD1Q8NFF5 587 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 FAM71BQ8TC56 605 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 TMX3Q96JJ7 454 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ARPC5LQ9BPX5 153 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 NACA2Q9H009 215 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 A1CFQ9NQ94 594 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 PRDM5Q9NQX1 630 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 KLC4Q9NSK0 619 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 AATFQ9NY61 560 aaKnown RBP eCLIP3.12□□□□□ -1.91
LIG4-203ENST00000442234 BAIAP2L1Q9UHR4 511 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 TRMT112Q9UI30 125 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 PAIP2BQ9ULR5 123 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 SAMM50Q9Y512 469 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 LAMA3Q16787 3333 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MYO7AQ13402 2215 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 AHCTF1Q8WYP5 2266 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ANKRD11Q6UB99 2663 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 ABCC3O15438 1527 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MYO9AB2RTY4 2548 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 VPS37CA5D8V6 355 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 USP27XA6NNY8 438 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 KCNQ3O43525 872 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SMARCA5O60264 1052 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 E2F6O75461 281 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 RTN3O95197 1032 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 ZRANB2O95218 330 aaKnown RBP eCLIP3.12□□□□□ -1.91
LIG4-203ENST00000442234 TRIM21P19474 475 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 MLLT3P42568 568 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 ZNF165P49910 485 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ZNF75DP51815 510 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MRPL12P52815 198 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 MXRA7P84157 204 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MPP3Q13368 585 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 CCDC85BQ15834 202 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 CCDC40Q4G0X9 1142 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 KCNV1Q6PIU1 500 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 DPP8Q6V1X1 898 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 NANOGNBQ7Z5D8 188 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 C2orf69Q8N8R5 385 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 FAM76AQ8TAV0 307 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SPAG5Q96R06 1193 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 PARD6BQ9BYG5 372 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 EPC1Q9H2F5 836 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 PAPOLBQ9NRJ5 636 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 UTP6Q9NYH9 597 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 ITM2BQ9Y287 266 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ATRNO75882 1429 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 NWD1Q149M9 1564 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 IQCA1LA6NCM1 817 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 APAF1O14727 1248 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 KRT38O76015 456 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 TUBB4AP04350 444 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 IGFBP4P22692 258 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SLC8A3P57103 927 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 GSDMDP57764 484 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 LRRFIP1Q32MZ4 808 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 Q4G0T1 1027 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ANO6Q4KMQ2 910 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ANO1Q5XXA6 986 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 CEP128Q6ZU80 1094 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MFN1Q8IWA4 741 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 TRIM58Q8NG06 486 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 BICD2Q8TD16 824 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 SMCR8Q8TEV9 937 aaPredicted RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 MXD3Q9BW11 206 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 UBA5Q9GZZ9 404 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms