RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TBC1D10CQ8IV04 446 aa22.11■■□□□ 1.13
SHH-204ENST00000441114 CEP95Q96GE4 821 aa22.11■■□□□ 1.13
SHH-204ENST00000441114 NBPF3Q9H094 633 aa22.11■■□□□ 1.13
SHH-204ENST00000441114 VCPKMTQ9H867 229 aa22.11■■□□□ 1.13
SHH-204ENST00000441114 CTNNA3Q9UI47 895 aa22.11■■□□□ 1.13
SHH-204ENST00000441114 IGKV6D-41A0A0C4DH26 115 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 MGAMO43451 1857 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 LACTBP83111 547 aaPredicted RBP22.1■■□□□ 1.13
SHH-204ENST00000441114 IMMTQ16891 758 aaKnown RBP22.1■■□□□ 1.13
SHH-204ENST00000441114 AKNAD1Q5T1N1 836 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 CATSPERGQ6ZRH7 1159 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 TANGO6Q9C0B7 1094 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 EFCC1Q9HA90 598 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 NYAP2Q9P242 653 aa22.1■■□□□ 1.13
SHH-204ENST00000441114 ORC4O43929 436 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 PEX10O60683 326 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 GCLCP48506 637 aaPredicted RBP22.09■■□□□ 1.13
SHH-204ENST00000441114 HERVK_113P62684 666 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 SAMD1Q6SPF0 538 aaPredicted RBP22.09■■□□□ 1.13
SHH-204ENST00000441114 OTOP1Q7RTM1 612 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 GOPCQ9HD26 462 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 MTMR4Q9NYA4 1195 aa22.09■■□□□ 1.13
SHH-204ENST00000441114 NMT2O60551 498 aa22.08■■□□□ 1.13
SHH-204ENST00000441114 FGRP09769 529 aa22.08■■□□□ 1.13
SHH-204ENST00000441114 PSMC4P43686 418 aa22.08■■□□□ 1.13
SHH-204ENST00000441114 ARHGEF6Q15052 776 aa22.08■■□□□ 1.13
SHH-204ENST00000441114 STAG1Q8WVM7 1258 aa22.08■■□□□ 1.13
SHH-204ENST00000441114 FMNL1O95466 1100 aaPredicted RBP22.07■■□□□ 1.12
SHH-204ENST00000441114 TTLL1O95922 423 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 CTGFP29279 349 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 KIAA1211Q6ZU35 1233 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 LRRC47Q8N1G4 583 aaKnown RBP22.07■■□□□ 1.12
SHH-204ENST00000441114 LPAR1Q92633 364 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 CHMP4CQ96CF2 233 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 ESYT1Q9BSJ8 1104 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 PAGR1Q9BTK6 254 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 RNF41Q9H4P4 317 aaPredicted RBP22.07■■□□□ 1.12
SHH-204ENST00000441114 PLIN4Q96Q06 1357 aa22.07■■□□□ 1.12
SHH-204ENST00000441114 NEDD4P46934 1319 aa22.06■■□□□ 1.12
SHH-204ENST00000441114 IL17RBQ9NRM6 502 aa22.06■■□□□ 1.12
SHH-204ENST00000441114 STX8Q9UNK0 236 aa22.06■■□□□ 1.12
SHH-204ENST00000441114 F5H6K3 240 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 WDR46O15213 610 aaKnown RBP22.05■■□□□ 1.12
SHH-204ENST00000441114 CDC45O75419 566 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 KLRC3Q07444 240 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 PKN2Q16513 984 aaKnown RBP22.05■■□□□ 1.12
SHH-204ENST00000441114 FAM110CQ1W6H9 321 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 CASC1Q6TDU7 716 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 NKX2-3Q8TAU0 364 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 TRIM47Q96LD4 638 aa22.05■■□□□ 1.12
SHH-204ENST00000441114 NUP88Q99567 741 aaPredicted RBP22.05■■□□□ 1.12
SHH-204ENST00000441114 U3KPZ7 1027 aaPredicted RBP22.05■■□□□ 1.12
SHH-204ENST00000441114 PCP11498 1178 aaKnown RBP22.04■■□□□ 1.12
SHH-204ENST00000441114 FCGRTP55899 365 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 COG2Q14746 738 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 FAM83BQ5T0W9 1011 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 ESR2Q92731 530 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 MKL1Q969V6 931 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 ABHD8Q96I13 439 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 TXNRD2Q9NNW7 524 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 RBPJLQ9UBG7 517 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 MTMR7Q9Y216 660 aa22.04■■□□□ 1.12
SHH-204ENST00000441114 B4E1Z4 1266 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 CAPN15O75808 1086 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 FLOT1O75955 427 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 NDUFB10O96000 172 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 FBXO46Q6PJ61 603 aaPredicted RBP22.03■■□□□ 1.12
SHH-204ENST00000441114 GPRC5AQ8NFJ5 357 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 ZKSCAN3Q9BRR0 538 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 ANO2Q9NQ90 1003 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 ISY1Q9ULR0 285 aaKnown RBP22.03■■□□□ 1.12
SHH-204ENST00000441114 PTPN22Q9Y2R2 807 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 RBM8AQ9Y5S9 174 aaKnown RBP22.03■■□□□ 1.12
SHH-204ENST00000441114 PARP14Q460N5 1801 aa22.03■■□□□ 1.12
SHH-204ENST00000441114 RLFQ13129 1914 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 SPDYE16A6NNV3 312 aaPredicted RBP22.02■■□□□ 1.12
SHH-204ENST00000441114 TNPO2O14787 897 aaKnown RBP22.02■■□□□ 1.12
SHH-204ENST00000441114 KDM4AO75164 1064 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 Q3C1V9 767 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 PPP4R3BQ5MIZ7 849 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 SLFN13Q68D06 897 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 POTEEQ6S8J3 1075 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 GTF3C2Q8WUA4 911 aaPredicted RBP22.02■■□□□ 1.12
SHH-204ENST00000441114 MAP4K1Q92918 833 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 FBXO28Q9NVF7 368 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 HOXC10Q9NYD6 342 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 MORF4L1Q9UBU8 362 aa22.02■■□□□ 1.12
SHH-204ENST00000441114 CYP21A2P08686 494 aa22.01■■□□□ 1.11
SHH-204ENST00000441114 ERVK-9P63128 1117 aa22.01■■□□□ 1.11
SHH-204ENST00000441114 ERVK-24P63145 666 aa22.01■■□□□ 1.11
SHH-204ENST00000441114 LSG1Q9H089 658 aaKnown RBP22.01■■□□□ 1.11
SHH-204ENST00000441114 RABGAP1Q9Y3P9 1069 aa22.01■■□□□ 1.11
SHH-204ENST00000441114 CNMDO75829 334 aa22■■□□□ 1.11
SHH-204ENST00000441114 HOXD10P28358 340 aa22■■□□□ 1.11
SHH-204ENST00000441114 DSG3P32926 999 aa22■■□□□ 1.11
SHH-204ENST00000441114 CCAR1Q8IX12 1150 aaKnown RBP22■■□□□ 1.11
SHH-204ENST00000441114 ATG4CQ96DT6 458 aa22■■□□□ 1.11
SHH-204ENST00000441114 KRT23Q9C075 422 aa22■■□□□ 1.11
SHH-204ENST00000441114 TCP11L1Q9NUJ3 509 aa22■■□□□ 1.11
SHH-204ENST00000441114 BTBD7Q9P203 1132 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms