RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 ZNF804BA4D1E1 1349 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 TSPY2A6NKD2 308 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 PPP1R3GB7ZBB8 358 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 POLR3GO15318 223 aaPredicted RBP15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 ERCC5P28715 1186 aaPredicted RBP15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 RRAGBQ5VZM2 374 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 TMCO3Q6UWJ1 677 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 TXNRD3Q86VQ6 643 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 MTRQ99707 1265 aa15.39■□□□□ 0.05
HERPUD1-204ENST00000439977 FXR1P51114 621 aaKnown RBP eCLIP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 PPP2R3AQ06190 1150 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 BMS1Q14692 1282 aaKnown RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 ELOA2Q8IYF1 753 aaPredicted RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 NSUN4Q96CB9 384 aaKnown RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 DCP1AQ9NPI6 582 aaPredicted RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 PUF60Q9UHX1 559 aaKnown RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 ECM29Q5VYK3 1845 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 XDHP47989 1333 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 MYO1BO43795 1136 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 USP17L8P0C7I0 530 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 PTF1AQ7RTS3 328 aa15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 ADD3Q9UEY8 706 aaKnown RBP15.38■□□□□ 0.05
HERPUD1-204ENST00000439977 RNF225M0QZC1 329 aaPredicted RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 FCHSD1Q86WN1 690 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 CCDC34Q96HJ3 373 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 BSDC1Q9NW68 430 aaPredicted RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 PP2D1A8MPX8 630 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 TUBB4AP04350 444 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 MAP3K9P80192 1104 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 UBE4AQ14139 1066 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 TBC1D9BQ66K14 1250 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 SH3RF1Q7Z6J0 888 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 ACRBPQ8NEB7 543 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 TNFRSF25Q93038 417 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 KIFC2Q96AC6 838 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 DYNLL2Q96FJ2 89 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 TAB2Q9NYJ8 693 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 CNTNAP5Q8WYK1 1306 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 EFCAB8A8MWE9 144 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 PES1O00541 588 aaKnown RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 N4BP3O15049 544 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 CCDC175P0C221 793 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 PLA2G4AP47712 749 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 GABPB1Q06547 395 aaPredicted RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 STAG2Q8N3U4 1231 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 BRIP1Q9BX63 1249 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 ZCCHC17Q9NP64 241 aaKnown RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 MCM9Q9NXL9 1143 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 FAM53CQ9NYF3 392 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 SRP68Q9UHB9 627 aaKnown RBP15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 ZNF652Q9Y2D9 606 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 GDAQ9Y2T3 454 aa15.37■□□□□ 0.05
HERPUD1-204ENST00000439977 ABCA3Q99758 1704 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 SCG2P13521 617 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 FERMT2Q96AC1 680 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 KIF20AO95235 890 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 GYPCP04921 128 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 RCAN1P53805 252 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 LINC00116Q8NCU8 138 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 RASSF8Q8NHQ8 419 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 GSDMAQ96QA5 445 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 MTA3Q9BTC8 594 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 CPVLQ9H3G5 476 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 RBM28Q9NW13 759 aaKnown RBP15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 ARGLU1Q9NWB6 273 aaPredicted RBP15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 MRFAP1Q9Y605 127 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 ADGRG1Q9Y653 693 aa15.36■□□□□ 0.05
HERPUD1-204ENST00000439977 ATP2C1P98194 919 aaPredicted RBP15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 ZNF569Q5MCW4 686 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 RASGRP2Q7LDG7 609 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 IQUBQ8NA54 791 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 LRP5O75197 1615 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 TAF1P21675 1872 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 TRIM49BA6NDI0 452 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 SASH3O75995 380 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 PPP2R5BQ15173 497 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 KRT31Q15323 416 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 CDKAL1Q5VV42 579 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 PARD6BQ9BYG5 372 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 FAM205AQ6ZU69 1335 aa15.35■□□□□ 0.05
HERPUD1-204ENST00000439977 HIBADHP31937 336 aaKnown RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 RPS8P62241 208 aaKnown RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 TFAP4Q01664 338 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 FILIP1LQ4L180 1135 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 NOL10Q9BSC4 688 aaKnown RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 SRRTQ9BXP5 876 aaKnown RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 MFAP3LO75121 409 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 TYW1BQ6NUM6 668 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 BCL9LQ86UU0 1499 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 SLC44A5Q8NCS7 719 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 NUP88Q99567 741 aaPredicted RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 CRNKL1Q9BZJ0 848 aaKnown RBP15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 MYH2Q9UKX2 1941 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 ANKRD36CQ5JPF3 1778 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 SPATA31A1Q5TZJ5 1347 aa15.34■□□□□ 0.05
HERPUD1-204ENST00000439977 USP17L3A6NCW0 530 aa15.33■□□□□ 0.05
HERPUD1-204ENST00000439977 USP17L4A6NCW7 530 aa15.33■□□□□ 0.05
HERPUD1-204ENST00000439977 ZRANB2O95218 330 aaKnown RBP eCLIP15.33■□□□□ 0.05
HERPUD1-204ENST00000439977 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.05
HERPUD1-204ENST00000439977 CALM1P0DP23 149 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms