RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ANXA13P27216 316 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 INPP1P49441 399 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 RRS1Q15050 365 aaKnown RBP7.91□□□□□ -1.14
VPS53-204ENST00000437048 ADALQ6DHV7 355 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 CCDC117Q8IWD4 279 aaPredicted RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 MAGI1Q96QZ7 1491 aaPredicted RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 BRF1Q92994 677 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 UPF3AQ9H1J1 476 aaKnown RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 SMARCA5O60264 1052 aaPredicted RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 KRT4P19013 534 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 LZTFL1Q9NQ48 299 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 CDC37Q16543 378 aaPredicted RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 SPOPO43791 374 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 TSR2Q969E8 191 aaKnown RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 IPO11Q9UI26 975 aaKnown RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 KRT15P19012 456 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 SDSP20132 328 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 PHEXP78562 749 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 RASSF7Q02833 373 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 KCNH3Q9ULD8 1083 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 KRT8P05787 483 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 HPDP32754 393 aaPredicted RBP7.9□□□□□ -1.14
VPS53-204ENST00000437048 MAP7D3Q8IWC1 876 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 RHPN1Q8TCX5 695 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 CPLX3Q8WVH0 158 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 FOXP3Q9BZS1 431 aa7.9□□□□□ -1.14
VPS53-204ENST00000437048 ATP8B2P98198 1209 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 FANCCQ00597 558 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 PSD3Q9NYI0 1048 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 GOLGA8IPA6NC78 632 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 RSPH10B2B2RC85 870 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 CHGBP05060 677 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 RSPH10BP0C881 870 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 ELF2Q15723 593 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 RGS12O14924 1447 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 RHOXF2BP0C7M4 288 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 DDX5P17844 614 aaKnown RBP7.9□□□□□ -1.15
VPS53-204ENST00000437048 GARSP41250 739 aaKnown RBP7.9□□□□□ -1.15
VPS53-204ENST00000437048 GSDMBQ8TAX9 411 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 RHOXF2Q9BQY4 288 aa7.9□□□□□ -1.15
VPS53-204ENST00000437048 TDRD7Q8NHU6 1098 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 POLR3DP05423 398 aaPredicted RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 CNPY2Q9Y2B0 182 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 ASXL2Q76L83 1435 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 TARSL2A2RTX5 802 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 hCG_1984214I3L0E3 225 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 IFIT1BQ5T764 474 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 TTC25Q96NG3 672 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 NOC4LQ9BVI4 516 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 CABP5Q9NP86 173 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 RASSF10A6NK89 507 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 ILF2Q12905 390 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 ANKLE2Q86XL3 938 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 CCDC13Q8IYE1 715 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 APOA1P02647 267 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 TMTC3Q6ZXV5 915 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 C17orf53Q8N3J3 647 aaPredicted RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 ZNF280CQ8ND82 737 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 SEPT3Q9UH03 358 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 PHACTR2O75167 634 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 POLR2BP30876 1174 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 EDEM3Q9BZQ6 932 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 MPP6Q9NZW5 540 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 SESN3P58005 492 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 ORC2Q13416 577 aaPredicted RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 SFMBT2Q5VUG0 894 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 AK8Q96MA6 479 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 THUMPD2Q9BTF0 503 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 BRIP1Q9BX63 1249 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 VPS37BQ9H9H4 285 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 PODXLO00592 558 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 LRRC8CQ8TDW0 803 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 HOOK2Q96ED9 719 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 EFCAB14O75071 495 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 FAM13AO94988 1023 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 PSMA4P25789 261 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 TERF2Q15554 542 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 LRRC37BQ96QE4 947 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 TMEM60Q9H2L4 133 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 ASIC3Q9UHC3 531 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 MAPK13O15264 365 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 MRPS9P82933 396 aaKnown RBP7.89□□□□□ -1.15
VPS53-204ENST00000437048 ATG16L1Q676U5 607 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 FBXO18Q8NFZ0 1043 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 PHKBQ93100 1093 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 UBA5Q9GZZ9 404 aa7.89□□□□□ -1.15
VPS53-204ENST00000437048 KLF18A0A0U1RQI7 1052 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 SLC12A2P55011 1212 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 MRPS35P82673 323 aaKnown RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 ASIC2Q16515 512 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 CCDC89Q8N998 374 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 GDPD2Q9HCC8 539 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 KIF23Q02241 960 aaPredicted RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 POLR1AO95602 1720 aaPredicted RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 MAGEA1P43355 309 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 ANO1Q5XXA6 986 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 TLDC2A0PJX2 215 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 KIAA1468Q9P260 1216 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 PPP1R42Q7Z4L9 355 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms