RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 SH2D3CQ8N5H7 860 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 SUFUQ9UMX1 484 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CPDO75976 1380 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 SLIT1O75093 1534 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 RICTORQ6R327 1708 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 PIK3C2AO00443 1686 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 TTC26A0AVF1 554 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 PDE2AO00408 941 aaPredicted RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 EIF3HO15372 352 aaKnown RBP eCLIP12.98□□□□□ -0.333e-12■□□□□ 8.5
HMGCS1-202ENST00000433297 RDXP35241 583 aaKnown RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 PSEN1P49768 467 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CYP27A1Q02318 531 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CKAP4Q07065 602 aaKnown RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 GIMAP7Q8NHV1 300 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 HAUS4Q9H6D7 363 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CD248Q9HCU0 757 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CEP131Q9UPN4 1083 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 LUC7L2Q9Y383 392 aaKnown RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 KCNJ18B7U540 433 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 KCNA6P17658 529 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 KCNJ12Q14500 433 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 TTF1Q15361 905 aaPredicted RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 ZNF174Q15697 407 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 SLC52A2Q9HAB3 445 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 NLRP2Q9NX02 1062 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 ZSWIM5Q9P217 1185 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CEP83Q9Y592 693 aa12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 ZC3H4Q9UPT8 1303 aaKnown RBP12.98□□□□□ -0.33
HMGCS1-202ENST00000433297 CHRM1P11229 460 aaPredicted RBP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 OR8K1Q8NGG5 319 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 IGDCC4Q8TDY8 1250 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 RAPGEF4Q8WZA2 1011 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 WASF1Q92558 559 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 ARL8AQ96BM9 186 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 CWC25Q9NXE8 425 aaPredicted RBP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 KRT86O43790 486 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 CXCR5P32302 372 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 TTLL7Q6ZT98 887 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 LRRC1Q9BTT6 524 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 LY9Q9HBG7 655 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 CASP7P55210 303 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 DHX37Q8IY37 1157 aaKnown RBP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 SMCR8Q8TEV9 937 aaPredicted RBP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 LACRTQ9GZZ8 138 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 SMARCAL1Q9NZC9 954 aa12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 DMGDHQ9UI17 866 aaKnown RBP12.97□□□□□ -0.33
HMGCS1-202ENST00000433297 PSMD14O00487 310 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 SHOX2O60902 331 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 FMNL1O95466 1100 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 RTN1Q16799 776 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 KCNH5Q8NCM2 988 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 NELFBQ8WX92 580 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 CABS1Q96KC9 395 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 STRN4Q9NRL3 753 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 FAM184BQ9ULE4 1060 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 AXIN2Q9Y2T1 843 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 MRC1P22897 1456 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 TRIM75PA6NK02 468 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 GCP02774 474 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 SSBP05455 408 aaKnown RBP eCLIP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 DNA2P51530 1060 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 ZC3H6P61129 1189 aaKnown RBP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 HERVK_113P62684 666 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 ELOA2Q8IYF1 753 aaPredicted RBP12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 PLBD2Q8NHP8 589 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 TMEM87BQ96K49 555 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 GPR108Q9NPR9 543 aa12.96□□□□□ -0.33
HMGCS1-202ENST00000433297 PRDM1O75626 825 aa12.96□□□□□ -0.34
HMGCS1-202ENST00000433297 TCP11X2Q5H9J9 407 aa12.96□□□□□ -0.34
HMGCS1-202ENST00000433297 SPATA20Q8TB22 786 aa12.96□□□□□ -0.34
HMGCS1-202ENST00000433297 TRIM49BA6NDI0 452 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 OPA1O60313 960 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 HSF2BPO75031 334 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 KRT14P02533 472 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 PAK1Q13153 545 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 GSDMAQ96QA5 445 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 DIP2BQ9P265 1576 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 TARSL2A2RTX5 802 aaKnown RBP12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 RCCD1A6NED2 376 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 H7C1W4 665 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 ECM2O94769 699 aaPredicted RBP12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 CEP57Q86XR8 500 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 EHD2Q9NZN4 543 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 GDAQ9Y2T3 454 aa12.95□□□□□ -0.34
HMGCS1-202ENST00000433297 TRIM21P19474 475 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 KRT83P78385 493 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 GUCY1A3Q02108 690 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 CCDC96Q2M329 555 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 CCDC181Q5TID7 509 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 ZNF579Q8NAF0 562 aaKnown RBP12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 NAPBQ9H115 298 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 FOXP1Q9H334 677 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 GRIN2DO15399 1336 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 ITIH6Q6UXX5 1313 aa12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 RGPD8O14715 1765 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-202ENST00000433297 CCDC196A0A1B0GTZ2 297 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms