RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 CEP95Q96GE4 821 aa22.11■■□□□ 1.13
SHH-202ENST00000430104 NBPF3Q9H094 633 aa22.11■■□□□ 1.13
SHH-202ENST00000430104 VCPKMTQ9H867 229 aa22.11■■□□□ 1.13
SHH-202ENST00000430104 CTNNA3Q9UI47 895 aa22.11■■□□□ 1.13
SHH-202ENST00000430104 IGKV6D-41A0A0C4DH26 115 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 MGAMO43451 1857 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 LACTBP83111 547 aaPredicted RBP22.1■■□□□ 1.13
SHH-202ENST00000430104 IMMTQ16891 758 aaKnown RBP22.1■■□□□ 1.13
SHH-202ENST00000430104 AKNAD1Q5T1N1 836 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 CATSPERGQ6ZRH7 1159 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 TANGO6Q9C0B7 1094 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 EFCC1Q9HA90 598 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 NYAP2Q9P242 653 aa22.1■■□□□ 1.13
SHH-202ENST00000430104 ORC4O43929 436 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 PEX10O60683 326 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 GCLCP48506 637 aaPredicted RBP22.09■■□□□ 1.13
SHH-202ENST00000430104 HERVK_113P62684 666 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 SAMD1Q6SPF0 538 aaPredicted RBP22.09■■□□□ 1.13
SHH-202ENST00000430104 OTOP1Q7RTM1 612 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 GOPCQ9HD26 462 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 MTMR4Q9NYA4 1195 aa22.09■■□□□ 1.13
SHH-202ENST00000430104 NMT2O60551 498 aa22.08■■□□□ 1.13
SHH-202ENST00000430104 FGRP09769 529 aa22.08■■□□□ 1.13
SHH-202ENST00000430104 PSMC4P43686 418 aa22.08■■□□□ 1.13
SHH-202ENST00000430104 ARHGEF6Q15052 776 aa22.08■■□□□ 1.13
SHH-202ENST00000430104 STAG1Q8WVM7 1258 aa22.08■■□□□ 1.13
SHH-202ENST00000430104 FMNL1O95466 1100 aaPredicted RBP22.07■■□□□ 1.12
SHH-202ENST00000430104 TTLL1O95922 423 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 CTGFP29279 349 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 KIAA1211Q6ZU35 1233 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 LRRC47Q8N1G4 583 aaKnown RBP22.07■■□□□ 1.12
SHH-202ENST00000430104 LPAR1Q92633 364 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 CHMP4CQ96CF2 233 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 ESYT1Q9BSJ8 1104 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 PAGR1Q9BTK6 254 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 RNF41Q9H4P4 317 aaPredicted RBP22.07■■□□□ 1.12
SHH-202ENST00000430104 PLIN4Q96Q06 1357 aa22.07■■□□□ 1.12
SHH-202ENST00000430104 NEDD4P46934 1319 aa22.06■■□□□ 1.12
SHH-202ENST00000430104 IL17RBQ9NRM6 502 aa22.06■■□□□ 1.12
SHH-202ENST00000430104 STX8Q9UNK0 236 aa22.06■■□□□ 1.12
SHH-202ENST00000430104 F5H6K3 240 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 WDR46O15213 610 aaKnown RBP22.05■■□□□ 1.12
SHH-202ENST00000430104 CDC45O75419 566 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 KLRC3Q07444 240 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 PKN2Q16513 984 aaKnown RBP22.05■■□□□ 1.12
SHH-202ENST00000430104 FAM110CQ1W6H9 321 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 CASC1Q6TDU7 716 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 NKX2-3Q8TAU0 364 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 TRIM47Q96LD4 638 aa22.05■■□□□ 1.12
SHH-202ENST00000430104 NUP88Q99567 741 aaPredicted RBP22.05■■□□□ 1.12
SHH-202ENST00000430104 U3KPZ7 1027 aaPredicted RBP22.05■■□□□ 1.12
SHH-202ENST00000430104 PCP11498 1178 aaKnown RBP22.04■■□□□ 1.12
SHH-202ENST00000430104 FCGRTP55899 365 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 COG2Q14746 738 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 FAM83BQ5T0W9 1011 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 ESR2Q92731 530 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 MKL1Q969V6 931 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 ABHD8Q96I13 439 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 TXNRD2Q9NNW7 524 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 RBPJLQ9UBG7 517 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 MTMR7Q9Y216 660 aa22.04■■□□□ 1.12
SHH-202ENST00000430104 B4E1Z4 1266 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 CAPN15O75808 1086 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 FLOT1O75955 427 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 NDUFB10O96000 172 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 FBXO46Q6PJ61 603 aaPredicted RBP22.03■■□□□ 1.12
SHH-202ENST00000430104 GPRC5AQ8NFJ5 357 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 ZKSCAN3Q9BRR0 538 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 ANO2Q9NQ90 1003 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 ISY1Q9ULR0 285 aaKnown RBP22.03■■□□□ 1.12
SHH-202ENST00000430104 PTPN22Q9Y2R2 807 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 RBM8AQ9Y5S9 174 aaKnown RBP22.03■■□□□ 1.12
SHH-202ENST00000430104 PARP14Q460N5 1801 aa22.03■■□□□ 1.12
SHH-202ENST00000430104 RLFQ13129 1914 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 SPDYE16A6NNV3 312 aaPredicted RBP22.02■■□□□ 1.12
SHH-202ENST00000430104 TNPO2O14787 897 aaKnown RBP22.02■■□□□ 1.12
SHH-202ENST00000430104 KDM4AO75164 1064 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 Q3C1V9 767 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 PPP4R3BQ5MIZ7 849 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 SLFN13Q68D06 897 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 POTEEQ6S8J3 1075 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 GTF3C2Q8WUA4 911 aaPredicted RBP22.02■■□□□ 1.12
SHH-202ENST00000430104 MAP4K1Q92918 833 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 FBXO28Q9NVF7 368 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 HOXC10Q9NYD6 342 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 MORF4L1Q9UBU8 362 aa22.02■■□□□ 1.12
SHH-202ENST00000430104 CYP21A2P08686 494 aa22.01■■□□□ 1.11
SHH-202ENST00000430104 ERVK-9P63128 1117 aa22.01■■□□□ 1.11
SHH-202ENST00000430104 ERVK-24P63145 666 aa22.01■■□□□ 1.11
SHH-202ENST00000430104 LSG1Q9H089 658 aaKnown RBP22.01■■□□□ 1.11
SHH-202ENST00000430104 RABGAP1Q9Y3P9 1069 aa22.01■■□□□ 1.11
SHH-202ENST00000430104 CNMDO75829 334 aa22■■□□□ 1.11
SHH-202ENST00000430104 HOXD10P28358 340 aa22■■□□□ 1.11
SHH-202ENST00000430104 DSG3P32926 999 aa22■■□□□ 1.11
SHH-202ENST00000430104 CCAR1Q8IX12 1150 aaKnown RBP22■■□□□ 1.11
SHH-202ENST00000430104 ATG4CQ96DT6 458 aa22■■□□□ 1.11
SHH-202ENST00000430104 KRT23Q9C075 422 aa22■■□□□ 1.11
SHH-202ENST00000430104 TCP11L1Q9NUJ3 509 aa22■■□□□ 1.11
SHH-202ENST00000430104 BTBD7Q9P203 1132 aa22■■□□□ 1.11
SHH-202ENST00000430104 HPS5Q9UPZ3 1129 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms