RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 PSTPIP2Q9H939 334 aa14.63□□□□□ -0.07
PTCH1-207ENST00000429896 LTN1O94822 1766 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 USP17L5A8MUK1 530 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 CYP2D6P10635 497 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 SYKP43405 635 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 KLHL10Q6JEL2 608 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 KCTD1Q719H9 257 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 REXO1Q8N1G1 1221 aaKnown RBP14.62□□□□□ -0.07
PTCH1-207ENST00000429896 CAMKK2Q96RR4 588 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 PSMD1Q99460 953 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 DCP1AQ9NPI6 582 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-207ENST00000429896 ANO10Q9NW15 660 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 ZNF70Q9UC06 446 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-207ENST00000429896 CHMP2AO43633 222 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 NOD1Q9Y239 953 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 ZHX2Q9Y6X8 837 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 RMND1Q9NWS8 449 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 ANGEL2Q5VTE6 544 aaKnown RBP14.62□□□□□ -0.07
PTCH1-207ENST00000429896 SPC25Q9HBM1 224 aa14.62□□□□□ -0.07
PTCH1-207ENST00000429896 GNPTABQ3T906 1256 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 CMTR1Q8N1G2 835 aaKnown RBP14.61□□□□□ -0.07
PTCH1-207ENST00000429896 STAT2P52630 851 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 NCBP1Q09161 790 aaKnown RBP14.61□□□□□ -0.07
PTCH1-207ENST00000429896 RRAGBQ5VZM2 374 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 C3orf67Q6ZVT6 689 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 DPP9Q86TI2 863 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 GGA3Q9NZ52 723 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 VPS54Q9P1Q0 977 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 SERPINA10Q9UK55 444 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 CNPY2Q9Y2B0 182 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 STK24Q9Y6E0 443 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 CCDC150Q8NCX0 1101 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 WDR70Q9NW82 654 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 DKC1O60832 514 aaKnown RBP eCLIP14.61□□□□□ -0.07
PTCH1-207ENST00000429896 KRT40Q6A162 431 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 FAM160B2Q86V87 743 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 GTF3C6Q969F1 213 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 AMNQ9BXJ7 453 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 AZI2Q9H6S1 392 aa14.61□□□□□ -0.07
PTCH1-207ENST00000429896 TNNT1P13805 278 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 TM4SF1P30408 202 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 MRPS27Q92552 414 aaKnown RBP14.6□□□□□ -0.07
PTCH1-207ENST00000429896 PFKFB2O60825 505 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 VPS33BQ9H267 617 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 ONECUT3O60422 494 aaPredicted RBP14.6□□□□□ -0.07
PTCH1-207ENST00000429896 UBE2HP62256 183 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 ERCC4Q92889 916 aaPredicted RBP14.6□□□□□ -0.07
PTCH1-207ENST00000429896 AKT1S1Q96B36 256 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 HERC5Q9UII4 1024 aaKnown RBP14.6□□□□□ -0.07
PTCH1-207ENST00000429896 KCNJ14Q9UNX9 436 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 SLFNL1Q499Z3 407 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 SYDE2Q5VT97 1194 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 TMEM87AQ8NBN3 555 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 SPDYE4A6NLX3 237 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 KLRK1P26718 216 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 DNM1Q05193 864 aaKnown RBP14.6□□□□□ -0.07
PTCH1-207ENST00000429896 ZNF609O15014 1411 aa14.6□□□□□ -0.07
PTCH1-207ENST00000429896 SCG2P13521 617 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 PDE4DQ08499 809 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 RASA3Q14644 834 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 STAG1Q8WVM7 1258 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 ERLIN2O94905 339 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 TTC38Q5R3I4 469 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 ATL3Q6DD88 541 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 UPF1Q92900 1129 aaKnown RBP eCLIP14.59□□□□□ -0.07
PTCH1-207ENST00000429896 PCDHA1Q9Y5I3 950 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 DDX39AO00148 427 aaKnown RBP14.59□□□□□ -0.07
PTCH1-207ENST00000429896 SYT1P21579 422 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 GOLGA6L10A6NI86 522 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 ENTPD3O75355 529 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 FAM13AO94988 1023 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 AFMP43652 599 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 HAUS3Q68CZ6 603 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 CTR9Q6PD62 1173 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 PEAK1Q9H792 1746 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 FAM196BA6NMK8 535 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 CNGA1P29973 690 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 ME3Q16798 604 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 CDC42EP5Q6NZY7 148 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 TTC14Q96N46 770 aa14.59□□□□□ -0.07
PTCH1-207ENST00000429896 MRC1P22897 1456 aa14.58□□□□□ -0.07
PTCH1-207ENST00000429896 CCT6AP40227 531 aaKnown RBP14.58□□□□□ -0.07
PTCH1-207ENST00000429896 USP17L2Q6R6M4 530 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 SAMD7Q7Z3H4 446 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 MMP14P50281 582 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 GALNT17Q6IS24 598 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 DCAF4Q8WV16 495 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 DHX58Q96C10 678 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 TESPA1A2RU30 521 aaPredicted RBP14.58□□□□□ -0.08
PTCH1-207ENST00000429896 SLC16A2P36021 539 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 ASIC1P78348 528 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 GPKOWQ92917 476 aaPredicted RBP eCLIP14.58□□□□□ -0.08
PTCH1-207ENST00000429896 OTUD5Q96G74 571 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 VWA3AA6NCI4 1184 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 FKBP15Q5T1M5 1219 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 NCAPH2Q6IBW4 605 aa14.58□□□□□ -0.08
PTCH1-207ENST00000429896 OSBPL5Q9H0X9 879 aaPredicted RBP14.58□□□□□ -0.08
PTCH1-207ENST00000429896 ADARB2Q9NS39 739 aaKnown RBP14.58□□□□□ -0.08
PTCH1-207ENST00000429896 SH2B2O14492 632 aaPredicted RBP14.57□□□□□ -0.08
PTCH1-207ENST00000429896 TXKP42681 527 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms