RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 PHIPQ8WWQ0 1821 aa13.03□□□□□ -0.32
USP49-204ENST00000423567 ROBO3Q96MS0 1386 aa13.03□□□□□ -0.32
USP49-204ENST00000423567 SMIM22K7EJ46 135 aa13.02□□□□□ -0.33
USP49-204ENST00000423567 TTC22Q5TAA0 569 aa13.02□□□□□ -0.33
USP49-204ENST00000423567 P2RX7Q99572 595 aaKnown RBP13.02□□□□□ -0.33
USP49-204ENST00000423567 TNPO2O14787 897 aaKnown RBP13.01□□□□□ -0.33
USP49-204ENST00000423567 PRDM1O75626 825 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 VCAM1P19320 739 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 RASA1P20936 1047 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 PDE4AP27815 886 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 HERVK_113P62684 666 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 CWC27Q6UX04 472 aaKnown RBP13.01□□□□□ -0.33
USP49-204ENST00000423567 NBPF11Q86T75 865 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 CCAR1Q8IX12 1150 aaKnown RBP13.01□□□□□ -0.33
USP49-204ENST00000423567 LPAR1Q92633 364 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 COA7Q96BR5 231 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 TRIM47Q96LD4 638 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 GOPCQ9HD26 462 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 SRRDQ9UH36 339 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 CCDC171Q6TFL3 1326 aa13.01□□□□□ -0.33
USP49-204ENST00000423567 PTPRFP10586 1907 aa13□□□□□ -0.33
USP49-204ENST00000423567 BAZ2AQ9UIF9 1905 aaKnown RBP13□□□□□ -0.33
USP49-204ENST00000423567 LOC285556D6RIA3 1793 aa13□□□□□ -0.33
USP49-204ENST00000423567 MYPNQ86TC9 1320 aa13□□□□□ -0.33
USP49-204ENST00000423567 A0A1W2PRG0 241 aa13□□□□□ -0.33
USP49-204ENST00000423567 RAD21O60216 631 aa13□□□□□ -0.33
USP49-204ENST00000423567 TSPY3P0CV98 308 aa13□□□□□ -0.33
USP49-204ENST00000423567 TSPY8P0CW00 308 aa13□□□□□ -0.33
USP49-204ENST00000423567 EEF2P13639 858 aaKnown RBP13□□□□□ -0.33
USP49-204ENST00000423567 ALX1Q15699 326 aa13□□□□□ -0.33
USP49-204ENST00000423567 SLC9C1Q4G0N8 1177 aa13□□□□□ -0.33
USP49-204ENST00000423567 VPS53Q5VIR6 699 aa13□□□□□ -0.33
USP49-204ENST00000423567 CATSPERGQ6ZRH7 1159 aa13□□□□□ -0.33
USP49-204ENST00000423567 CENPQQ7L2Z9 268 aaPredicted RBP13□□□□□ -0.33
USP49-204ENST00000423567 CLEC10AQ8IUN9 316 aa13□□□□□ -0.33
USP49-204ENST00000423567 GPRC5AQ8NFJ5 357 aa13□□□□□ -0.33
USP49-204ENST00000423567 RAET1EQ8TD07 263 aa13□□□□□ -0.33
USP49-204ENST00000423567 TANGO6Q9C0B7 1094 aa13□□□□□ -0.33
USP49-204ENST00000423567 RPAP3Q9H6T3 665 aaPredicted RBP13□□□□□ -0.33
USP49-204ENST00000423567 TMX2Q9Y320 296 aa13□□□□□ -0.33
USP49-204ENST00000423567 PTCH2Q9Y6C5 1203 aa13□□□□□ -0.33
USP49-204ENST00000423567 HSPD1P10809 573 aaKnown RBP12.99□□□□□ -0.33
USP49-204ENST00000423567 CCNA1P78396 465 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 CAP1Q01518 475 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 PPP4R3BQ5MIZ7 849 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 ZNF589Q86UQ0 364 aaPredicted RBP12.99□□□□□ -0.33
USP49-204ENST00000423567 PAGR1Q9BTK6 254 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 VCPKMTQ9H867 229 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 CWC22Q9HCG8 908 aaKnown RBP12.99□□□□□ -0.33
USP49-204ENST00000423567 TOMM22Q9NS69 142 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 MORF4L1Q9UBU8 362 aa12.99□□□□□ -0.33
USP49-204ENST00000423567 ZMYM6O95789 1325 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
USP49-204ENST00000423567 FOXP2O15409 715 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 FGAP02671 866 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 CENPBP07199 599 aaPredicted RBP12.98□□□□□ -0.33
USP49-204ENST00000423567 CTGFP29279 349 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 CTDSPL2Q05D32 466 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 SPICE1Q8N0Z3 855 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 RUFY2Q8WXA3 655 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 HOXC10Q9NYD6 342 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 NYAP2Q9P242 653 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 ANAPC4Q9UJX5 808 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 RABGAP1Q9Y3P9 1069 aa12.98□□□□□ -0.33
USP49-204ENST00000423567 TSPY2A6NKD2 308 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 RANBP6O60518 1105 aaKnown RBP12.97□□□□□ -0.33
USP49-204ENST00000423567 TTLL1O95922 423 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 GSPT1P15170 499 aaKnown RBP12.97□□□□□ -0.33
USP49-204ENST00000423567 MAPK4P31152 587 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 ERVK-9P63128 1117 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 ERVK-24P63145 666 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 TFAP4Q01664 338 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 PRKCZQ05513 592 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 COG2Q14746 738 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 SIAH1Q8IUQ4 282 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 NEDD1Q8NHV4 660 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 ARMC5Q96C12 935 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 CCDC136Q96JN2 1154 aa12.97□□□□□ -0.33
USP49-204ENST00000423567 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP49-204ENST00000423567 BIN2Q9UBW5 565 aaPredicted RBP12.97□□□□□ -0.33
USP49-204ENST00000423567 RAD50Q92878 1312 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 FLOT1O75955 427 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 SOX10P56693 466 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 FAM47AQ5JRC9 791 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 ASTLQ6HA08 431 aaPredicted RBP12.96□□□□□ -0.33
USP49-204ENST00000423567 LBX2Q6XYB7 198 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 TMEM106CQ9BVX2 250 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 RNF41Q9H4P4 317 aaPredicted RBP12.96□□□□□ -0.33
USP49-204ENST00000423567 TXNRD2Q9NNW7 524 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 MTMR4Q9NYA4 1195 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 RBPJLQ9UBG7 517 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 CLIP2Q9UDT6 1046 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 CTNNA3Q9UI47 895 aa12.96□□□□□ -0.33
USP49-204ENST00000423567 MYH8P13535 1937 aa12.96□□□□□ -0.34
USP49-204ENST00000423567 PLIN4Q96Q06 1357 aa12.95□□□□□ -0.34
USP49-204ENST00000423567 IGKV6D-41A0A0C4DH26 115 aa12.95□□□□□ -0.34
USP49-204ENST00000423567 SPDYE16A6NNV3 312 aaPredicted RBP12.95□□□□□ -0.34
USP49-204ENST00000423567 ZNF213O14771 459 aa12.95□□□□□ -0.34
USP49-204ENST00000423567 ORC4O43929 436 aa12.95□□□□□ -0.34
USP49-204ENST00000423567 PCP11498 1178 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms