RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 COBLO75128 1261 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 IGHA2P01877 340 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 MYCNP04198 464 aaPredicted RBP9.84□□□□□ -0.83
VIM-202ENST00000421459 CCNA1P78396 465 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 GRB14Q14449 540 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 LBX2Q6XYB7 198 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 SPICE1Q8N0Z3 855 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 RHPN1Q8TCX5 695 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 ARMT1Q9H993 441 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 MCM9Q9NXL9 1143 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 CDK5RAP2Q96SN8 1893 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 GLRX3O76003 335 aaKnown RBP9.83□□□□□ -0.84
VIM-202ENST00000421459 AKR1B1P15121 316 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 ERCC3P19447 782 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 ADORA2AP29274 412 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 COG2Q14746 738 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 DPP9Q86TI2 863 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 SIRT2Q8IXJ6 389 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 MIER1Q8N108 512 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 TANGO6Q9C0B7 1094 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 DCP1AQ9NPI6 582 aaPredicted RBP9.83□□□□□ -0.84
VIM-202ENST00000421459 ATP11BQ9Y2G3 1177 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 IVNS1ABPQ9Y6Y0 642 aa9.83□□□□□ -0.84
VIM-202ENST00000421459 FOCADQ5VW36 1801 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 IGSF3O75054 1194 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 HOXC6P09630 235 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 CYBAP13498 195 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 RTP1P59025 263 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 PLS1Q14651 629 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 GPR153Q6NV75 609 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 LPAR1Q92633 364 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 FERMT2Q96AC1 680 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 ATG4CQ96DT6 458 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 CRNKL1Q9BZJ0 848 aaKnown RBP9.82□□□□□ -0.84
VIM-202ENST00000421459 SPATC1LQ9H0A9 340 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 BOLA2Q9H3K6 86 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 STXBP5LQ9Y2K9 1186 aa9.82□□□□□ -0.84
VIM-202ENST00000421459 DNM1LO00429 736 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 MBD4O95243 580 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 DSG3P32926 999 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 SHHQ15465 462 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 C9orf50Q5SZB4 431 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 SLC39A5Q6ZMH5 540 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 SH3RF1Q7Z6J0 888 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 NCAPG2Q86XI2 1143 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 CERS3Q8IU89 383 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 ERC1Q8IUD2 1116 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 GUCD1Q96NT3 240 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 FBXO28Q9NVF7 368 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 HOXC10Q9NYD6 342 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 VCANP13611 3396 aa9.81□□□□□ -0.84
VIM-202ENST00000421459 TRIM43BA6NCK2 446 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 POTEB2H3BUK9 544 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 FLOT1O75955 427 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 PGK2P07205 417 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 IFIT2P09913 472 aaKnown RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 TAL1P17542 331 aaPredicted RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 ADCYAP1R1P41586 468 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 CDK8P49336 464 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 TMEM132BQ14DG7 1078 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 TTF1Q15361 905 aaPredicted RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 TRIM60Q495X7 471 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 STK11IPQ8N1F8 1099 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 BADQ92934 168 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 TRIM43Q96BQ3 446 aaPredicted RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 LBHD1Q9BQE6 289 aaPredicted RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 PRDM5Q9NQX1 630 aaPredicted RBP9.8□□□□□ -0.84
VIM-202ENST00000421459 COG6Q9Y2V7 657 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 MYH1P12882 1939 aa9.8□□□□□ -0.84
VIM-202ENST00000421459 SPTBN5Q9NRC6 3674 aaKnown RBP9.79□□□□□ -0.84
VIM-202ENST00000421459 USP17L12C9JPN9 530 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 USP17L21D6R901 530 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 SEPT4O43236 478 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 RAD21O60216 631 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 SMARCA5O60264 1052 aaPredicted RBP9.79□□□□□ -0.84
VIM-202ENST00000421459 EEF2P13639 858 aaKnown RBP9.79□□□□□ -0.84
VIM-202ENST00000421459 ITGB8P26012 769 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 ADD2P35612 726 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 ICA1Q05084 483 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 LRRC41Q15345 812 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 FAM47AQ5JRC9 791 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 OLFML2BQ68BL8 750 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 TMEM179Q6ZVK1 233 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 CLASRPQ8N2M8 674 aaKnown RBP9.79□□□□□ -0.84
VIM-202ENST00000421459 LENG1Q96BZ8 264 aaPredicted RBP9.79□□□□□ -0.84
VIM-202ENST00000421459 KIF1BPQ96EK5 621 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 MAML3Q96JK9 1138 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 VCPKMTQ9H867 229 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 PAG1Q9NWQ8 432 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 TMX2Q9Y320 296 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 CDH23Q9H251 3354 aa9.79□□□□□ -0.84
VIM-202ENST00000421459 PRUNE2Q8WUY3 3088 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 KBTBD13C9JR72 458 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 STRNO43815 780 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 MSCO60682 206 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 PGK1P00558 417 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 IRX5P78411 483 aaPredicted RBP9.78□□□□□ -0.84
VIM-202ENST00000421459 HSP90AB4PQ58FF6 505 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 C12orf60Q5U649 245 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 ARRDC4Q8NCT1 418 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms