RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 EMC10Q5UCC4 262 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 DHX37Q8IY37 1157 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 USHBP1Q8N6Y0 703 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 NCOA7Q8NI08 942 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 MAGEC3Q8TD91 643 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 LTV1Q96GA3 475 aaPredicted RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 SGSM3Q96HU1 749 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 SLC40A1Q9NP59 571 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 BCL9LQ86UU0 1499 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 WNK3Q9BYP7 1800 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 TNKS1BP1Q9C0C2 1729 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 ANO9A1A5B4 782 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 LRRC10BA6NIK2 292 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 FOXP2O15409 715 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 CDR1P51861 262 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 CCDC122Q5T0U0 273 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 KDM7AQ6ZMT4 941 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 MMGT1Q8N4V1 131 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 ZNF473Q8WTR7 871 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 RUFY1Q96T51 708 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 TRIM6Q9C030 488 aaPredicted RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 LIMA1Q9UHB6 759 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 RTN2O75298 545 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 CCT6AP40227 531 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 EPHB4P54760 987 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 HERVK_113P62684 666 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 IRX1P78414 480 aaPredicted RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 C2orf54Q08AI8 447 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 TRIM29Q14134 588 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 KRT31Q15323 416 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 EMBQ6PCB8 327 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 DDX21Q9NR30 783 aaKnown RBP eCLIP9□□□□□ -0.97
HMGXB4-202ENST00000418170 RBM28Q9NW13 759 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 DDX20Q9UHI6 824 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 EP400Q96L91 3159 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 SH2B2O14492 632 aaPredicted RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 N4BP3O15049 544 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 HSF2BPO75031 334 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 ATP2B2Q01814 1243 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 NEXNQ0ZGT2 675 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 AIMP1Q12904 312 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 SNCBQ16143 134 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 RNF187Q5TA31 235 aaPredicted RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 RALYLQ86SE5 291 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 NOSTRINQ8IVI9 506 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 CCDC50Q8IVM0 306 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 TSEN2Q8NCE0 465 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 PARP4Q9UKK3 1724 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 C1orf167Q5SNV9 1468 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 A0A1B0GUA9 196 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 ZNF185O15231 689 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 METAP2P50579 478 aaKnown RBP eCLIP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 TOB1P50616 345 aaPredicted RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 ITIH3Q06033 890 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 RABL6Q3YEC7 729 aaPredicted RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 CAVIN3Q969G5 261 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PAPPAQ13219 1627 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PRAMEF22A3QJZ6 481 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PPP1R3GB7ZBB8 358 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 ATP1A2P50993 1020 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 C6orf89Q6UWU4 347 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 ZNF572Q7Z3I7 529 aaPredicted RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 RIC3Q7Z5B4 369 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PHKBQ93100 1093 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 AIDAQ96BJ3 306 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 DMGDHQ9UI17 866 aaKnown RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PPP1R37O75864 691 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 FGAP02671 866 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 NNTQ13423 1086 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 PTGISQ16647 500 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 TLDC1Q6P9B6 456 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 SH2D3CQ8N5H7 860 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 MYCBPAPQ8TBZ2 947 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 HDAC7Q8WUI4 952 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 OSBP2Q969R2 916 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 RNPC3Q96LT9 517 aaKnown RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 CENPHQ9H3R5 247 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 ACTR5Q9H9F9 607 aaPredicted RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 CCDC9Q9Y3X0 531 aaKnown RBP8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 UBR2Q8IWV8 1755 aa8.99□□□□□ -0.97
HMGXB4-202ENST00000418170 SRRM3A6NNA2 597 aaPredicted RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 KRT86O43790 486 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 A1BGP04217 495 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 EZRP15311 586 aaKnown RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 NAIF1Q69YI7 327 aaPredicted RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 CYB5D1Q6P9G0 228 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 FAM228AQ86W67 206 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 PARP9Q8IXQ6 854 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 ATP6V0A4Q9HBG4 840 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 ANGEL1Q9UNK9 670 aaKnown RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 PATL2C9JE40 543 aaKnown RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 FAM107AO95990 144 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 COPB1P53618 953 aaKnown RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 NLRP6P59044 892 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 KRT83P78385 493 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 GUCY1A3Q02108 690 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 PDIA6Q15084 440 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 EZH2Q15910 746 aaKnown RBP8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 AKAP4Q5JQC9 854 aa8.98□□□□□ -0.97
HMGXB4-202ENST00000418170 CEP57Q86XR8 500 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms